miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17368 3' -53.4 NC_004367.1 + 116875 0.7 0.845152
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU-----GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 117031 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 117083 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 117135 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 117187 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 117239 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 117291 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 116722 0.7 0.845152
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU-----GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 116773 0.7 0.845152
Target:  5'- cGGGUGcccAGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU---UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 116979 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 116927 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 116825 0.69 0.876299
Target:  5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3'
miRNA:   3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 78302 0.66 0.967193
Target:  5'- uGAUGAGCCUCuuCCuucuacgucaucccaACCGGgGCGucaacgaAGGCa -3'
miRNA:   3'- uCUAUUCGGAG--GG---------------UGGCCaUGU-------UCCG- -5'
17368 3' -53.4 NC_004367.1 + 92355 0.66 0.962863
Target:  5'- uGGUucGCCUCCUgcuGCuCGGUugGgagcugGGGCu -3'
miRNA:   3'- uCUAuuCGGAGGG---UG-GCCAugU------UCCG- -5'
17368 3' -53.4 NC_004367.1 + 49051 0.66 0.959274
Target:  5'- -----uGCCUCCgGCCG-UGCAcAGGCc -3'
miRNA:   3'- ucuauuCGGAGGgUGGCcAUGU-UCCG- -5'
17368 3' -53.4 NC_004367.1 + 22926 0.67 0.937766
Target:  5'- cGGUAGGUaccCCUACCGGUAgGuauugguacuacAGGCg -3'
miRNA:   3'- uCUAUUCGga-GGGUGGCCAUgU------------UCCG- -5'
17368 3' -53.4 NC_004367.1 + 115982 0.67 0.937766
Target:  5'- cGGUAGGUaccCCUACCGGUAgGuauugguacuacAGGCg -3'
miRNA:   3'- uCUAUUCGga-GGGUGGCCAUgU------------UCCG- -5'
17368 3' -53.4 NC_004367.1 + 74871 0.68 0.921911
Target:  5'- uAGGUGgcAGCaugUCCUgaGCCGGUGCuguGGCu -3'
miRNA:   3'- -UCUAU--UCGg--AGGG--UGGCCAUGuu-CCG- -5'
17368 3' -53.4 NC_004367.1 + 11059 0.68 0.897295
Target:  5'- aAGAaGAGCCg-UCAUCGGUGCGuauGGCc -3'
miRNA:   3'- -UCUaUUCGGagGGUGGCCAUGUu--CCG- -5'
17368 3' -53.4 NC_004367.1 + 110176 0.68 0.897295
Target:  5'- uAGGUGAGCCUUCCGguuugaGGgaacaACAGGGUg -3'
miRNA:   3'- -UCUAUUCGGAGGGUgg----CCa----UGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.