Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17368 | 3' | -53.4 | NC_004367.1 | + | 97061 | 1.13 | 0.002699 |
Target: 5'- cAGAUAAGCCUCCCACCGGUACAAGGCa -3' miRNA: 3'- -UCUAUUCGGAGGGUGGCCAUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 22032 | 0.78 | 0.41383 |
Target: 5'- cGGAgccuGCCUCCCGCgGGcuucuuUGCAGGGCu -3' miRNA: 3'- -UCUauu-CGGAGGGUGgCC------AUGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 97246 | 0.75 | 0.548497 |
Target: 5'- gGGAUcagcuGCCUUgUACCGGUGgGAGGCu -3' miRNA: 3'- -UCUAuu---CGGAGgGUGGCCAUgUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 19385 | 0.75 | 0.558729 |
Target: 5'- gGGcgGAGCa-CCCACCGGUcGCAacAGGCa -3' miRNA: 3'- -UCuaUUCGgaGGGUGGCCA-UGU--UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 54686 | 0.74 | 0.641902 |
Target: 5'- uGAUGgaAGCCUCCCAUCGGcUACAuauucaauGGUu -3' miRNA: 3'- uCUAU--UCGGAGGGUGGCC-AUGUu-------CCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 116773 | 0.7 | 0.845152 |
Target: 5'- cGGGUGcccAGCCUCCCGgguuuuCCGgGUGCccAGGCc -3' miRNA: 3'- -UCUAU---UCGGAGGGU------GGC-CAUGu-UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 116722 | 0.7 | 0.845152 |
Target: 5'- cGGGUGcccaGGCCUCCCGgguuuCCGgGUGCccAGGCc -3' miRNA: 3'- -UCUAU----UCGGAGGGU-----GGC-CAUGu-UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 116875 | 0.7 | 0.845152 |
Target: 5'- cGGGUGcccaGGCCUCCCGgguuuCCGgGUGCccAGGCc -3' miRNA: 3'- -UCUAU----UCGGAGGGU-----GGC-CAUGu-UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 116927 | 0.69 | 0.876299 |
Target: 5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3' miRNA: 3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 117291 | 0.69 | 0.876299 |
Target: 5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3' miRNA: 3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 117239 | 0.69 | 0.876299 |
Target: 5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3' miRNA: 3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 117187 | 0.69 | 0.876299 |
Target: 5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3' miRNA: 3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 117135 | 0.69 | 0.876299 |
Target: 5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3' miRNA: 3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 117083 | 0.69 | 0.876299 |
Target: 5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3' miRNA: 3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 117031 | 0.69 | 0.876299 |
Target: 5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3' miRNA: 3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 116979 | 0.69 | 0.876299 |
Target: 5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3' miRNA: 3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 116825 | 0.69 | 0.876299 |
Target: 5'- cGGGUGcccaGGCCUCCCGgguuuuCCGgGUGCccAGGCc -3' miRNA: 3'- -UCUAU----UCGGAGGGU------GGC-CAUGu-UCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 11059 | 0.68 | 0.897295 |
Target: 5'- aAGAaGAGCCg-UCAUCGGUGCGuauGGCc -3' miRNA: 3'- -UCUaUUCGGagGGUGGCCAUGUu--CCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 110176 | 0.68 | 0.897295 |
Target: 5'- uAGGUGAGCCUUCCGguuugaGGgaacaACAGGGUg -3' miRNA: 3'- -UCUAUUCGGAGGGUgg----CCa----UGUUCCG- -5' |
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17368 | 3' | -53.4 | NC_004367.1 | + | 74871 | 0.68 | 0.921911 |
Target: 5'- uAGGUGgcAGCaugUCCUgaGCCGGUGCuguGGCu -3' miRNA: 3'- -UCUAU--UCGg--AGGG--UGGCCAUGuu-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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