Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17371 | 3' | -62.8 | NC_004367.1 | + | 146152 | 0.66 | 0.546597 |
Target: 5'- -cGCCCCggcCACGCCCacCCCCGCUc -3' miRNA: 3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 146095 | 0.68 | 0.417448 |
Target: 5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3' miRNA: 3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 145824 | 0.66 | 0.546597 |
Target: 5'- -cGCCCCggcCACGCCCacCCCCGCUc -3' miRNA: 3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 145767 | 0.68 | 0.417448 |
Target: 5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3' miRNA: 3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 145497 | 0.66 | 0.546597 |
Target: 5'- -cGCCCCggcCACGCCCacCCCCGCUc -3' miRNA: 3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 145440 | 0.68 | 0.417448 |
Target: 5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3' miRNA: 3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 145169 | 0.66 | 0.546597 |
Target: 5'- -cGCCCCggcCACGCCCacCCCCGCUc -3' miRNA: 3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 145112 | 0.68 | 0.417448 |
Target: 5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3' miRNA: 3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 144841 | 0.66 | 0.546597 |
Target: 5'- -cGCCCCggcCACGCCCacCCCCGCUc -3' miRNA: 3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 144784 | 0.68 | 0.417448 |
Target: 5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3' miRNA: 3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 144514 | 0.66 | 0.546597 |
Target: 5'- -cGCCCCggcCACGCCCacCCCCGCUc -3' miRNA: 3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 144457 | 0.68 | 0.417448 |
Target: 5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3' miRNA: 3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 144186 | 0.66 | 0.546597 |
Target: 5'- -cGCCCCggcCACGCCCacCCCCGCUc -3' miRNA: 3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 144129 | 0.68 | 0.417448 |
Target: 5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3' miRNA: 3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 143858 | 0.66 | 0.546597 |
Target: 5'- -cGCCCCggcCACGCCCacCCCCGCUc -3' miRNA: 3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 143801 | 0.68 | 0.417448 |
Target: 5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3' miRNA: 3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 143531 | 0.66 | 0.546597 |
Target: 5'- -cGCCCCggcCACGCCCacCCCCGCUc -3' miRNA: 3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 143474 | 0.68 | 0.417448 |
Target: 5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3' miRNA: 3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 143203 | 0.66 | 0.546597 |
Target: 5'- -cGCCCCggcCACGCCCacCCCCGCUc -3' miRNA: 3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 143146 | 0.68 | 0.417448 |
Target: 5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3' miRNA: 3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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