miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17371 3' -62.8 NC_004367.1 + 149429 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 149372 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 149101 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 149044 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 148773 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 148716 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 148446 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 148389 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 148118 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 148061 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 147790 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 147733 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 147463 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 147406 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 147135 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 147078 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 146807 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 146750 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 146480 0.66 0.546597
Target:  5'- -cGCCCCggcCACGCCCacCCCCGCUc -3'
miRNA:   3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5'
17371 3' -62.8 NC_004367.1 + 146423 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.