miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17371 3' -62.8 NC_004367.1 + 108064 1.04 0.001182
Target:  5'- cAAGCCCCCCACACACCCUCCCCACUAg -3'
miRNA:   3'- -UUCGGGGGGUGUGUGGGAGGGGUGAU- -5'
17371 3' -62.8 NC_004367.1 + 22012 0.77 0.113895
Target:  5'- -cGUCCCCCGCcACACCCUUCCCAa-- -3'
miRNA:   3'- uuCGGGGGGUG-UGUGGGAGGGGUgau -5'
17371 3' -62.8 NC_004367.1 + 55605 0.77 0.113895
Target:  5'- -cGUCCCCCGCcACACCCUUCCCAa-- -3'
miRNA:   3'- uuCGGGGGGUG-UGUGGGAGGGGUgau -5'
17371 3' -62.8 NC_004367.1 + 33706 0.73 0.212425
Target:  5'- cAAGCCCCCCACcugcCAgCCUUUCCACa- -3'
miRNA:   3'- -UUCGGGGGGUGu---GUgGGAGGGGUGau -5'
17371 3' -62.8 NC_004367.1 + 128707 0.72 0.233764
Target:  5'- gGGGCCCuCCCAgCACagGCCCaauuccuguuUCCCCGCUAa -3'
miRNA:   3'- -UUCGGG-GGGU-GUG--UGGG----------AGGGGUGAU- -5'
17371 3' -62.8 NC_004367.1 + 128938 0.72 0.233764
Target:  5'- -cGgCCUCCugACACCCUCCCUgggACUGg -3'
miRNA:   3'- uuCgGGGGGugUGUGGGAGGGG---UGAU- -5'
17371 3' -62.8 NC_004367.1 + 126029 0.72 0.233764
Target:  5'- -cGgCCUCCugACACCCUCCCUgggACUGg -3'
miRNA:   3'- uuCgGGGGGugUGUGGGAGGGG---UGAU- -5'
17371 3' -62.8 NC_004367.1 + 123120 0.72 0.233764
Target:  5'- -cGgCCUCCugACACCCUCCCUgggACUGg -3'
miRNA:   3'- uuCgGGGGGugUGUGGGAGGGG---UGAU- -5'
17371 3' -62.8 NC_004367.1 + 120211 0.72 0.233764
Target:  5'- -cGgCCUCCugACACCCUCCCUgggACUGg -3'
miRNA:   3'- uuCgGGGGGugUGUGGGAGGGG---UGAU- -5'
17371 3' -62.8 NC_004367.1 + 56869 0.68 0.400529
Target:  5'- cGGGCCuggagCCCCACGCcggGCCUggagCCCCACg- -3'
miRNA:   3'- -UUCGG-----GGGGUGUG---UGGGa---GGGGUGau -5'
17371 3' -62.8 NC_004367.1 + 142818 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 142491 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 142163 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 141835 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 141508 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 141180 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 140852 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 140525 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 143474 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5'
17371 3' -62.8 NC_004367.1 + 143146 0.68 0.417448
Target:  5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3'
miRNA:   3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.