Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17371 | 3' | -62.8 | NC_004367.1 | + | 22012 | 0.77 | 0.113895 |
Target: 5'- -cGUCCCCCGCcACACCCUUCCCAa-- -3' miRNA: 3'- uuCGGGGGGUG-UGUGGGAGGGGUgau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 29076 | 0.67 | 0.465216 |
Target: 5'- -cGCCCCCCAucaucCACACCCguuguuaucauauaaUUCCCuCUAg -3' miRNA: 3'- uuCGGGGGGU-----GUGUGGG---------------AGGGGuGAU- -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 33706 | 0.73 | 0.212425 |
Target: 5'- cAAGCCCCCCACcugcCAgCCUUUCCACa- -3' miRNA: 3'- -UUCGGGGGGUGu---GUgGGAGGGGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 55605 | 0.77 | 0.113895 |
Target: 5'- -cGUCCCCCGCcACACCCUUCCCAa-- -3' miRNA: 3'- uuCGGGGGGUG-UGUGGGAGGGGUgau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 56869 | 0.68 | 0.400529 |
Target: 5'- cGGGCCuggagCCCCACGCcggGCCUggagCCCCACg- -3' miRNA: 3'- -UUCGG-----GGGGUGUG---UGGGa---GGGGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 59792 | 0.66 | 0.556385 |
Target: 5'- gAGGCcauuuCCUCCACuaaugguuuCACCCUCCUCGCa- -3' miRNA: 3'- -UUCG-----GGGGGUGu--------GUGGGAGGGGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 93160 | 0.66 | 0.563267 |
Target: 5'- gGAGCaCCUcggcacacagauuuCCggcugACAUugCCUCCCCACUAa -3' miRNA: 3'- -UUCG-GGG--------------GG-----UGUGugGGAGGGGUGAU- -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 94072 | 0.66 | 0.546597 |
Target: 5'- uAGCCUaUCAUACA-CCUCCCCGCg- -3' miRNA: 3'- uUCGGGgGGUGUGUgGGAGGGGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 108064 | 1.04 | 0.001182 |
Target: 5'- cAAGCCCCCCACACACCCUCCCCACUAg -3' miRNA: 3'- -UUCGGGGGGUGUGUGGGAGGGGUGAU- -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 120211 | 0.72 | 0.233764 |
Target: 5'- -cGgCCUCCugACACCCUCCCUgggACUGg -3' miRNA: 3'- uuCgGGGGGugUGUGGGAGGGG---UGAU- -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 122888 | 0.66 | 0.527191 |
Target: 5'- gGGGCCCUCCcaGCACagGCCCaauuccuguuUCCCaCGCUAa -3' miRNA: 3'- -UUCGGGGGG--UGUG--UGGG----------AGGG-GUGAU- -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 123120 | 0.72 | 0.233764 |
Target: 5'- -cGgCCUCCugACACCCUCCCUgggACUGg -3' miRNA: 3'- uuCgGGGGGugUGUGGGAGGGG---UGAU- -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 125797 | 0.66 | 0.527191 |
Target: 5'- gGGGCCCUCCcaGCACagGCCCaauuccuguuUCCCaCGCUAa -3' miRNA: 3'- -UUCGGGGGG--UGUG--UGGG----------AGGG-GUGAU- -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 126029 | 0.72 | 0.233764 |
Target: 5'- -cGgCCUCCugACACCCUCCCUgggACUGg -3' miRNA: 3'- uuCgGGGGGugUGUGGGAGGGG---UGAU- -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 128707 | 0.72 | 0.233764 |
Target: 5'- gGGGCCCuCCCAgCACagGCCCaauuccuguuUCCCCGCUAa -3' miRNA: 3'- -UUCGGG-GGGU-GUG--UGGG----------AGGGGUGAU- -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 128938 | 0.72 | 0.233764 |
Target: 5'- -cGgCCUCCugACACCCUCCCUgggACUGg -3' miRNA: 3'- uuCgGGGGGugUGUGGGAGGGG---UGAU- -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 131455 | 0.67 | 0.49295 |
Target: 5'- uAGCCCCCaCACggGCucguaacaaaagaauGCCCcgCCCCACUc -3' miRNA: 3'- uUCGGGGG-GUG--UG---------------UGGGa-GGGGUGAu -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 140525 | 0.68 | 0.417448 |
Target: 5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3' miRNA: 3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 140582 | 0.66 | 0.546597 |
Target: 5'- -cGCCCCggcCACGCCCacCCCCGCUc -3' miRNA: 3'- uuCGGGGgguGUGUGGGa-GGGGUGAu -5' |
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17371 | 3' | -62.8 | NC_004367.1 | + | 140852 | 0.68 | 0.417448 |
Target: 5'- -cGCCCCCCGCccCGCCgUUCgCCACg- -3' miRNA: 3'- uuCGGGGGGUGu-GUGGgAGG-GGUGau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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