miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17375 5' -60.3 NC_004367.1 + 145169 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 145497 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 146152 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 146480 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 146807 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 147135 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 147463 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 147790 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 148118 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 148446 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 148773 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 149101 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 149429 0.68 0.573122
Target:  5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3'
miRNA:   3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5'
17375 5' -60.3 NC_004367.1 + 2651 0.68 0.563169
Target:  5'- cGACCCCAaccucGACCCCaaccucgaCCCCaaCCAUUGAAa -3'
miRNA:   3'- cUUGGGGU-----UUGGGG--------GGGG--GGUGACUU- -5'
17375 5' -60.3 NC_004367.1 + 108065 0.68 0.563169
Target:  5'- aAGCCCCccACacaCCCUCCCCACUaGGGg -3'
miRNA:   3'- cUUGGGGuuUGg--GGGGGGGGUGA-CUU- -5'
17375 5' -60.3 NC_004367.1 + 147952 0.68 0.532639
Target:  5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3'
miRNA:   3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5'
17375 5' -60.3 NC_004367.1 + 140416 0.68 0.532639
Target:  5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3'
miRNA:   3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5'
17375 5' -60.3 NC_004367.1 + 140743 0.68 0.532639
Target:  5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3'
miRNA:   3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5'
17375 5' -60.3 NC_004367.1 + 141071 0.68 0.532639
Target:  5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3'
miRNA:   3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5'
17375 5' -60.3 NC_004367.1 + 141399 0.68 0.532639
Target:  5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3'
miRNA:   3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.