Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17375 | 5' | -60.3 | NC_004367.1 | + | 141237 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 141565 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 141892 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 142548 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 143531 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 143203 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 143858 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 140582 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 140909 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 144186 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 144514 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 145497 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 142875 | 0.68 | 0.573122 |
Target: 5'- -cGCCCCGGccACgCCCaCCCCCGCUc-- -3' miRNA: 3'- cuUGGGGUU--UGgGGG-GGGGGUGAcuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 2651 | 0.68 | 0.563169 |
Target: 5'- cGACCCCAaccucGACCCCaaccucgaCCCCaaCCAUUGAAa -3' miRNA: 3'- cUUGGGGU-----UUGGGG--------GGGG--GGUGACUU- -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 108065 | 0.68 | 0.563169 |
Target: 5'- aAGCCCCccACacaCCCUCCCCACUaGGGg -3' miRNA: 3'- cUUGGGGuuUGg--GGGGGGGGUGA-CUU- -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 145659 | 0.68 | 0.532639 |
Target: 5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3' miRNA: 3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 145331 | 0.68 | 0.532639 |
Target: 5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3' miRNA: 3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 145003 | 0.68 | 0.532639 |
Target: 5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3' miRNA: 3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 144676 | 0.68 | 0.532639 |
Target: 5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3' miRNA: 3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5' |
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17375 | 5' | -60.3 | NC_004367.1 | + | 144348 | 0.68 | 0.532639 |
Target: 5'- -uACCCCAAGCCCCCCCgggggugUCCAa---- -3' miRNA: 3'- cuUGGGGUUUGGGGGGG-------GGGUgacuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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