miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17380 5' -51.2 NC_004367.1 + 63552 0.73 0.790396
Target:  5'- gCGUUUAAGGCCCuguGAGGUagucucacCAGGCUg -3'
miRNA:   3'- -GCGAGUUCCGGGu--UUCUAaa------GUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 129518 0.73 0.780848
Target:  5'- gGCUUuAGGCCCAccuGAGAcUUCAGGgaaCCg -3'
miRNA:   3'- gCGAGuUCCGGGU---UUCUaAAGUCC---GG- -5'
17380 5' -51.2 NC_004367.1 + 126609 0.73 0.780848
Target:  5'- gGCUUuAGGCCCAccuGAGAcUUCAGGgaaCCg -3'
miRNA:   3'- gCGAGuUCCGGGU---UUCUaAAGUCC---GG- -5'
17380 5' -51.2 NC_004367.1 + 120790 0.73 0.780848
Target:  5'- gGCUUuAGGCCCAccuGAGAcUUCAGGgaaCCg -3'
miRNA:   3'- gCGAGuUCCGGGU---UUCUaAAGUCC---GG- -5'
17380 5' -51.2 NC_004367.1 + 123700 0.73 0.780848
Target:  5'- gGCUUuAGGCCCAccuGAGAcUUCAGGgaaCCg -3'
miRNA:   3'- gCGAGuUCCGGGU---UUCUaAAGUCC---GG- -5'
17380 5' -51.2 NC_004367.1 + 57109 0.75 0.689661
Target:  5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3'
miRNA:   3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 23708 0.75 0.689661
Target:  5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3'
miRNA:   3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 56989 0.75 0.689661
Target:  5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3'
miRNA:   3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 57189 0.75 0.689661
Target:  5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3'
miRNA:   3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 57149 0.75 0.689661
Target:  5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3'
miRNA:   3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 57029 0.75 0.689661
Target:  5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3'
miRNA:   3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 57069 0.75 0.689661
Target:  5'- gGCUCcAGGCCCGGccguGGGgcucCAGGCCc -3'
miRNA:   3'- gCGAGuUCCGGGUU----UCUaaa-GUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 104976 0.75 0.679134
Target:  5'- uGCaCAAGGCCUAAA-AUcUCAGGCCg -3'
miRNA:   3'- gCGaGUUCCGGGUUUcUAaAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 122625 1.12 0.004933
Target:  5'- gCGCUCAAGGCCCAAAGAUUUCAGGCCc -3'
miRNA:   3'- -GCGAGUUCCGGGUUUCUAAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 125534 1.12 0.004933
Target:  5'- gCGCUCAAGGCCCAAAGAUUUCAGGCCc -3'
miRNA:   3'- -GCGAGUUCCGGGUUUCUAAAGUCCGG- -5'
17380 5' -51.2 NC_004367.1 + 128443 1.12 0.004933
Target:  5'- gCGCUCAAGGCCCAAAGAUUUCAGGCCc -3'
miRNA:   3'- -GCGAGUUCCGGGUUUCUAAAGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.