miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17382 3' -56 NC_004367.1 + 72169 0.66 0.864113
Target:  5'- aCUGcAGGgCCCAGGCUg---CCCggucUGGg -3'
miRNA:   3'- -GAC-UCCgGGGUCCGAagaaGGGa---AUC- -5'
17382 3' -56 NC_004367.1 + 67986 0.67 0.848432
Target:  5'- -gGAGG-CCCAGGCUUCaagacaCCCgUGGu -3'
miRNA:   3'- gaCUCCgGGGUCCGAAGaa----GGGaAUC- -5'
17382 3' -56 NC_004367.1 + 56973 0.68 0.814721
Target:  5'- gUGGGGCUCCAGGCccgg-CCCa--- -3'
miRNA:   3'- gACUCCGGGGUCCGaagaaGGGaauc -5'
17382 3' -56 NC_004367.1 + 23612 0.68 0.814721
Target:  5'- gUGGGGCUCCAGGCccgg-CCCa--- -3'
miRNA:   3'- gACUCCGGGGUCCGaagaaGGGaauc -5'
17382 3' -56 NC_004367.1 + 121872 0.7 0.689461
Target:  5'- cCUGGGGCCUCAGGCccgggaCCCUg-- -3'
miRNA:   3'- -GACUCCGGGGUCCGaagaa-GGGAauc -5'
17382 3' -56 NC_004367.1 + 124781 0.7 0.689461
Target:  5'- cCUGGGGCCUCAGGCccgggaCCCUg-- -3'
miRNA:   3'- -GACUCCGGGGUCCGaagaa-GGGAauc -5'
17382 3' -56 NC_004367.1 + 127691 0.7 0.689461
Target:  5'- cCUGGGGCCUCAGGCccgggaCCCUg-- -3'
miRNA:   3'- -GACUCCGGGGUCCGaagaa-GGGAauc -5'
17382 3' -56 NC_004367.1 + 135822 0.71 0.627602
Target:  5'- uCUGAGGCCCCAGGggUgaUCUUUgAGg -3'
miRNA:   3'- -GACUCCGGGGUCCgaAgaAGGGAaUC- -5'
17382 3' -56 NC_004367.1 + 127828 0.71 0.596604
Target:  5'- uCUGAGaCaCCAGGCUUCUcCCCUUAu -3'
miRNA:   3'- -GACUCcGgGGUCCGAAGAaGGGAAUc -5'
17382 3' -56 NC_004367.1 + 122010 0.71 0.596604
Target:  5'- uCUGAGaCaCCAGGCUUCUcCCCUUAu -3'
miRNA:   3'- -GACUCcGgGGUCCGAAGAaGGGAAUc -5'
17382 3' -56 NC_004367.1 + 124919 0.71 0.596604
Target:  5'- uCUGAGaCaCCAGGCUUCUcCCCUUAu -3'
miRNA:   3'- -GACUCcGgGGUCCGAAGAaGGGAAUc -5'
17382 3' -56 NC_004367.1 + 83302 0.72 0.565845
Target:  5'- uUGAGGCaCCCAGGCaUCaUUCaCCggAGg -3'
miRNA:   3'- gACUCCG-GGGUCCGaAG-AAG-GGaaUC- -5'
17382 3' -56 NC_004367.1 + 130138 0.84 0.115871
Target:  5'- uCUGAGaCaCCAGGCUUCUUCCCUUAGg -3'
miRNA:   3'- -GACUCcGgGGUCCGAAGAAGGGAAUC- -5'
17382 3' -56 NC_004367.1 + 121411 0.84 0.115871
Target:  5'- uCUGAGaCaCCAGGCUUCUUCCCUUAGg -3'
miRNA:   3'- -GACUCcGgGGUCCGAAGAAGGGAAUC- -5'
17382 3' -56 NC_004367.1 + 124320 0.84 0.115871
Target:  5'- uCUGAGaCaCCAGGCUUCUUCCCUUAGg -3'
miRNA:   3'- -GACUCcGgGGUCCGAAGAAGGGAAUC- -5'
17382 3' -56 NC_004367.1 + 127229 0.84 0.115871
Target:  5'- uCUGAGaCaCCAGGCUUCUUCCCUUAGg -3'
miRNA:   3'- -GACUCcGgGGUCCGAAGAAGGGAAUC- -5'
17382 3' -56 NC_004367.1 + 121611 0.93 0.030548
Target:  5'- cCUGAGaCCCUAGGCUUCUUCCCUUAGg -3'
miRNA:   3'- -GACUCcGGGGUCCGAAGAAGGGAAUC- -5'
17382 3' -56 NC_004367.1 + 124520 0.93 0.030548
Target:  5'- cCUGAGaCCCUAGGCUUCUUCCCUUAGg -3'
miRNA:   3'- -GACUCcGGGGUCCGAAGAAGGGAAUC- -5'
17382 3' -56 NC_004367.1 + 127429 0.93 0.030548
Target:  5'- cCUGAGaCCCUAGGCUUCUUCCCUUAGg -3'
miRNA:   3'- -GACUCcGGGGUCCGAAGAAGGGAAUC- -5'
17382 3' -56 NC_004367.1 + 130338 0.93 0.030548
Target:  5'- cCUGAGaCCCUAGGCUUCUUCCCUUAGg -3'
miRNA:   3'- -GACUCcGGGGUCCGAAGAAGGGAAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.