Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17382 | 3' | -56 | NC_004367.1 | + | 121511 | 0.97 | 0.016112 |
Target: 5'- cCUGAGaCCCCAGGCUUCUUCCCUUAGg -3' miRNA: 3'- -GACUCcGGGGUCCGAAGAAGGGAAUC- -5' |
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17382 | 3' | -56 | NC_004367.1 | + | 124420 | 0.97 | 0.016112 |
Target: 5'- cCUGAGaCCCCAGGCUUCUUCCCUUAGg -3' miRNA: 3'- -GACUCcGGGGUCCGAAGAAGGGAAUC- -5' |
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17382 | 3' | -56 | NC_004367.1 | + | 127329 | 0.97 | 0.016112 |
Target: 5'- cCUGAGaCCCCAGGCUUCUUCCCUUAGg -3' miRNA: 3'- -GACUCcGGGGUCCGAAGAAGGGAAUC- -5' |
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17382 | 3' | -56 | NC_004367.1 | + | 130238 | 0.97 | 0.016112 |
Target: 5'- cCUGAGaCCCCAGGCUUCUUCCCUUAGg -3' miRNA: 3'- -GACUCcGGGGUCCGAAGAAGGGAAUC- -5' |
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17382 | 3' | -56 | NC_004367.1 | + | 127529 | 1.1 | 0.002264 |
Target: 5'- cCUGAGGCCCCAGGCUUCUUCCCUUAGg -3' miRNA: 3'- -GACUCCGGGGUCCGAAGAAGGGAAUC- -5' |
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17382 | 3' | -56 | NC_004367.1 | + | 124620 | 1.1 | 0.002264 |
Target: 5'- cCUGAGGCCCCAGGCUUCUUCCCUUAGg -3' miRNA: 3'- -GACUCCGGGGUCCGAAGAAGGGAAUC- -5' |
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17382 | 3' | -56 | NC_004367.1 | + | 121711 | 1.1 | 0.002264 |
Target: 5'- cCUGAGGCCCCAGGCUUCUUCCCUUAGg -3' miRNA: 3'- -GACUCCGGGGUCCGAAGAAGGGAAUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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