miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17382 5' -54.2 NC_004367.1 + 56550 0.66 0.944204
Target:  5'- -aUUAGGugaacGGGAgGAGGGAGGGGUUUGc -3'
miRNA:   3'- caGAUUC-----CCCUgUUUCCUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 116245 0.66 0.944204
Target:  5'- -aUUAGGugaacGGGAgGAGGGAGGGGUUUGc -3'
miRNA:   3'- caGAUUC-----CCCUgUUUCCUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 23188 0.66 0.944204
Target:  5'- -aUUAGGugaacGGGAgGAGGGAGGGGUUUGc -3'
miRNA:   3'- caGAUUC-----CCCUgUUUCCUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 98683 0.66 0.934018
Target:  5'- cGUCUccauaucAAGGGaGACGcgaaaagguGGGAGAGGCUg- -3'
miRNA:   3'- -CAGA-------UUCCC-CUGUu--------UCCUCUCCGGac -5'
17382 5' -54.2 NC_004367.1 + 125269 0.66 0.923852
Target:  5'- ---aAGGGuGGACuuGGGAcgGAGGCCUu -3'
miRNA:   3'- cagaUUCC-CCUGuuUCCU--CUCCGGAc -5'
17382 5' -54.2 NC_004367.1 + 128178 0.66 0.923852
Target:  5'- ---aAGGGuGGACuuGGGAcgGAGGCCUu -3'
miRNA:   3'- cagaUUCC-CCUGuuUCCU--CUCCGGAc -5'
17382 5' -54.2 NC_004367.1 + 140564 0.66 0.923852
Target:  5'- gGUUUu-GGGGugGGGGGGGGGuGCCc- -3'
miRNA:   3'- -CAGAuuCCCCugUUUCCUCUC-CGGac -5'
17382 5' -54.2 NC_004367.1 + 122360 0.66 0.923852
Target:  5'- ---aAGGGuGGACuuGGGAcgGAGGCCUu -3'
miRNA:   3'- cagaUUCC-CCUGuuUCCU--CUCCGGAc -5'
17382 5' -54.2 NC_004367.1 + 100058 0.67 0.918137
Target:  5'- ---gGAGGGGugGgcugggGAGGAGGGGUgggCUGg -3'
miRNA:   3'- cagaUUCCCCugU------UUCCUCUCCG---GAC- -5'
17382 5' -54.2 NC_004367.1 + 100094 0.67 0.918137
Target:  5'- ---gGAGGGGugGgcugggGAGGAGGGGUgggCUGg -3'
miRNA:   3'- cagaUUCCCCugU------UUCCUCUCCG---GAC- -5'
17382 5' -54.2 NC_004367.1 + 15414 0.67 0.912173
Target:  5'- ---aAGGGGGACGAucuGGcAGAGGCaCUc -3'
miRNA:   3'- cagaUUCCCCUGUUu--CC-UCUCCG-GAc -5'
17382 5' -54.2 NC_004367.1 + 108631 0.68 0.871268
Target:  5'- gGUCguggcAAGGGGACGuguaguauuGGAGAugugugGGCCUGc -3'
miRNA:   3'- -CAGa----UUCCCCUGUuu-------CCUCU------CCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 124866 0.7 0.766873
Target:  5'- -cCUGAGGGaACuAAGuGGAGGCCUGa -3'
miRNA:   3'- caGAUUCCCcUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 121957 0.7 0.766873
Target:  5'- -cCUGAGGGaACuAAGuGGAGGCCUGa -3'
miRNA:   3'- caGAUUCCCcUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 127775 0.7 0.766873
Target:  5'- -cCUGAGGGaACuAAGuGGAGGCCUGa -3'
miRNA:   3'- caGAUUCCCcUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 127873 0.76 0.471191
Target:  5'- gGUCUAAGGaGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCcCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 124964 0.76 0.471191
Target:  5'- gGUCUAAGGaGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCcCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 122055 0.76 0.471191
Target:  5'- gGUCUAAGGaGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCcCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 130083 0.78 0.332222
Target:  5'- cUCUaAAGGGGACcAAGuGGAGGCCUGa -3'
miRNA:   3'- cAGA-UUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 121356 0.78 0.332222
Target:  5'- cUCUaAAGGGGACcAAGuGGAGGCCUGa -3'
miRNA:   3'- cAGA-UUCCCCUGuUUCcUCUCCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.