miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17382 5' -54.2 NC_004367.1 + 124565 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 127574 1.09 0.003869
Target:  5'- gGUCUAAGGGGACAAAGGAGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGUUUCCUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 121855 0.92 0.0465
Target:  5'- gGUCUAAGGGGACcAGGGAGAGGCgUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCCUCUCCGgAC- -5'
17382 5' -54.2 NC_004367.1 + 124764 0.92 0.0465
Target:  5'- gGUCUAAGGGGACcAGGGAGAGGCgUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCCUCUCCGgAC- -5'
17382 5' -54.2 NC_004367.1 + 127674 0.92 0.0465
Target:  5'- gGUCUAAGGGGACcAGGGAGAGGCgUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCCUCUCCGgAC- -5'
17382 5' -54.2 NC_004367.1 + 121456 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 121556 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 121656 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 124365 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 124665 1.09 0.003869
Target:  5'- gGUCUAAGGGGACAAAGGAGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGUUUCCUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 121755 1.09 0.003869
Target:  5'- gGUCUAAGGGGACAAAGGAGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGUUUCCUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 121356 0.78 0.332222
Target:  5'- cUCUaAAGGGGACcAAGuGGAGGCCUGa -3'
miRNA:   3'- cAGA-UUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 127274 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 124265 0.78 0.332222
Target:  5'- cUCUaAAGGGGACcAAGuGGAGGCCUGa -3'
miRNA:   3'- cAGA-UUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 127374 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 130283 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 127174 0.78 0.332222
Target:  5'- cUCUaAAGGGGACcAAGuGGAGGCCUGa -3'
miRNA:   3'- cAGA-UUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 98683 0.66 0.934018
Target:  5'- cGUCUccauaucAAGGGaGACGcgaaaagguGGGAGAGGCUg- -3'
miRNA:   3'- -CAGA-------UUCCC-CUGUu--------UCCUCUCCGGac -5'
17382 5' -54.2 NC_004367.1 + 127474 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 130183 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.