miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17382 5' -54.2 NC_004367.1 + 121656 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 121755 1.09 0.003869
Target:  5'- gGUCUAAGGGGACAAAGGAGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGUUUCCUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 124665 1.09 0.003869
Target:  5'- gGUCUAAGGGGACAAAGGAGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGUUUCCUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 127574 1.09 0.003869
Target:  5'- gGUCUAAGGGGACAAAGGAGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGUUUCCUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 121855 0.92 0.0465
Target:  5'- gGUCUAAGGGGACcAGGGAGAGGCgUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCCUCUCCGgAC- -5'
17382 5' -54.2 NC_004367.1 + 124764 0.92 0.0465
Target:  5'- gGUCUAAGGGGACcAGGGAGAGGCgUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCCUCUCCGgAC- -5'
17382 5' -54.2 NC_004367.1 + 127674 0.92 0.0465
Target:  5'- gGUCUAAGGGGACcAGGGAGAGGCgUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCCUCUCCGgAC- -5'
17382 5' -54.2 NC_004367.1 + 121456 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 121556 0.89 0.080756
Target:  5'- gGUCUGAGGGGACuAAGuGGAGGCCUGa -3'
miRNA:   3'- -CAGAUUCCCCUGuUUCcUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 56550 0.66 0.944204
Target:  5'- -aUUAGGugaacGGGAgGAGGGAGGGGUUUGc -3'
miRNA:   3'- caGAUUC-----CCCUgUUUCCUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 116245 0.66 0.944204
Target:  5'- -aUUAGGugaacGGGAgGAGGGAGGGGUUUGc -3'
miRNA:   3'- caGAUUC-----CCCUgUUUCCUCUCCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 122360 0.66 0.923852
Target:  5'- ---aAGGGuGGACuuGGGAcgGAGGCCUu -3'
miRNA:   3'- cagaUUCC-CCUGuuUCCU--CUCCGGAc -5'
17382 5' -54.2 NC_004367.1 + 125269 0.66 0.923852
Target:  5'- ---aAGGGuGGACuuGGGAcgGAGGCCUu -3'
miRNA:   3'- cagaUUCC-CCUGuuUCCU--CUCCGGAc -5'
17382 5' -54.2 NC_004367.1 + 128178 0.66 0.923852
Target:  5'- ---aAGGGuGGACuuGGGAcgGAGGCCUu -3'
miRNA:   3'- cagaUUCC-CCUGuuUCCU--CUCCGGAc -5'
17382 5' -54.2 NC_004367.1 + 140564 0.66 0.923852
Target:  5'- gGUUUu-GGGGugGGGGGGGGGuGCCc- -3'
miRNA:   3'- -CAGAuuCCCCugUUUCCUCUC-CGGac -5'
17382 5' -54.2 NC_004367.1 + 100058 0.67 0.918137
Target:  5'- ---gGAGGGGugGgcugggGAGGAGGGGUgggCUGg -3'
miRNA:   3'- cagaUUCCCCugU------UUCCUCUCCG---GAC- -5'
17382 5' -54.2 NC_004367.1 + 100094 0.67 0.918137
Target:  5'- ---gGAGGGGugGgcugggGAGGAGGGGUgggCUGg -3'
miRNA:   3'- cagaUUCCCCugU------UUCCUCUCCG---GAC- -5'
17382 5' -54.2 NC_004367.1 + 108631 0.68 0.871268
Target:  5'- gGUCguggcAAGGGGACGuguaguauuGGAGAugugugGGCCUGc -3'
miRNA:   3'- -CAGa----UUCCCCUGUuu-------CCUCU------CCGGAC- -5'
17382 5' -54.2 NC_004367.1 + 23188 0.66 0.944204
Target:  5'- -aUUAGGugaacGGGAgGAGGGAGGGGUUUGc -3'
miRNA:   3'- caGAUUC-----CCCUgUUUCCUCUCCGGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.