Results 21 - 27 of 27 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 17388 | 3' | -45.7 | NC_004367.1 | + | 132954 | 1.07 | 0.037854 |
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Target: 5'- aACGUUUGUUGGUGCCAACAUUUGUUGg -3' miRNA: 3'- -UGCAAACAACCGCGGUUGUAAACAAC- -5' |
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| 17388 | 3' | -45.7 | NC_004367.1 | + | 133434 | 1.11 | 0.021491 |
|
Target: 5'- aACGUUUGUUGGCGCCAACAUUUGUUGg -3' miRNA: 3'- -UGCAAACAACCGCGGUUGUAAACAAC- -5' |
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| 17388 | 3' | -45.7 | NC_004367.1 | + | 133346 | 1.11 | 0.021491 |
|
Target: 5'- aACGUUUGUUGGCGCCAACAUUUGUUGg -3' miRNA: 3'- -UGCAAACAACCGCGGUUGUAAACAAC- -5' |
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| 17388 | 3' | -45.7 | NC_004367.1 | + | 133258 | 1.11 | 0.021491 |
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Target: 5'- aACGUUUGUUGGCGCCAACAUUUGUUGg -3' miRNA: 3'- -UGCAAACAACCGCGGUUGUAAACAAC- -5' |
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| 17388 | 3' | -45.7 | NC_004367.1 | + | 133122 | 1.11 | 0.021491 |
|
Target: 5'- aACGUUUGUUGGCGCCAACAUUUGUUGg -3' miRNA: 3'- -UGCAAACAACCGCGGUUGUAAACAAC- -5' |
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| 17388 | 3' | -45.7 | NC_004367.1 | + | 133082 | 1.11 | 0.021491 |
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Target: 5'- aACGUUUGUUGGCGCCAACAUUUGUUGg -3' miRNA: 3'- -UGCAAACAACCGCGGUUGUAAACAAC- -5' |
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| 17388 | 3' | -45.7 | NC_004367.1 | + | 133042 | 1.11 | 0.021491 |
|
Target: 5'- aACGUUUGUUGGCGCCAACAUUUGUUGg -3' miRNA: 3'- -UGCAAACAACCGCGGUUGUAAACAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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