Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17388 | 3' | -45.7 | NC_004367.1 | + | 133059 | 0.71 | 0.993393 |
Target: 5'- ----aUGgUGGUGCCcACAUUUGUUGg -3' miRNA: 3'- ugcaaACaACCGCGGuUGUAAACAAC- -5' |
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17388 | 3' | -45.7 | NC_004367.1 | + | 106974 | 0.7 | 0.997088 |
Target: 5'- aACGUUUGaUGGCGgaacugCGAgGUUUGUUGg -3' miRNA: 3'- -UGCAAACaACCGCg-----GUUgUAAACAAC- -5' |
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17388 | 3' | -45.7 | NC_004367.1 | + | 132994 | 0.68 | 0.999411 |
Target: 5'- aACGUUUGUUGGCGagGACccUUGa-- -3' miRNA: 3'- -UGCAAACAACCGCggUUGuaAACaac -5' |
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17388 | 3' | -45.7 | NC_004367.1 | + | 133162 | 0.68 | 0.999411 |
Target: 5'- aACGUUUGUUGGCGagGACccUUGa-- -3' miRNA: 3'- -UGCAAACAACCGCggUUGuaAACaac -5' |
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17388 | 3' | -45.7 | NC_004367.1 | + | 133386 | 0.68 | 0.999411 |
Target: 5'- aACGUUUGUUGGCGagGACccUUGa-- -3' miRNA: 3'- -UGCAAACAACCGCggUUGuaAACaac -5' |
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17388 | 3' | -45.7 | NC_004367.1 | + | 84477 | 0.66 | 0.999942 |
Target: 5'- aACGUgaccUGUacGGCGCCA---UUUGUUGg -3' miRNA: 3'- -UGCAa---ACAa-CCGCGGUuguAAACAAC- -5' |
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17388 | 3' | -45.7 | NC_004367.1 | + | 133697 | 0.66 | 0.999957 |
Target: 5'- aACaUUUGcUGGUGCCAACGUUU-UUGc -3' miRNA: 3'- -UGcAAACaACCGCGGUUGUAAAcAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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