miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17388 5' -47.7 NC_004367.1 + 3120 0.7 0.986648
Target:  5'- aGGCAgagcaaaGCGgguaUGUUGGCGCCAucUAUUg -3'
miRNA:   3'- -CCGU-------UGCaa--ACAACCGCGGUu-GUAAa -5'
17388 5' -47.7 NC_004367.1 + 29044 0.66 0.99962
Target:  5'- cGGCcuguUGUUUGagUGGCGCCAuCGa-- -3'
miRNA:   3'- -CCGuu--GCAAACa-ACCGCGGUuGUaaa -5'
17388 5' -47.7 NC_004367.1 + 59647 0.68 0.997087
Target:  5'- cGUAACGcaUGUUGuaGCCAAUAUUg -3'
miRNA:   3'- cCGUUGCaaACAACcgCGGUUGUAAa -5'
17388 5' -47.7 NC_004367.1 + 74022 0.66 0.999399
Target:  5'- uGGCAAUGa-UGUuaUGGUGUCGGCAg-- -3'
miRNA:   3'- -CCGUUGCaaACA--ACCGCGGUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 109060 0.66 0.99962
Target:  5'- gGGCAAUGggcaUGUUaccagGGCGCUGAUGUUg -3'
miRNA:   3'- -CCGUUGCaa--ACAA-----CCGCGGUUGUAAa -5'
17388 5' -47.7 NC_004367.1 + 132172 0.67 0.998864
Target:  5'- aGCaAACGUUUGUUGcccuGCGCCGuuCAUg- -3'
miRNA:   3'- cCG-UUGCAAACAAC----CGCGGUu-GUAaa -5'
17388 5' -47.7 NC_004367.1 + 132950 1.05 0.027216
Target:  5'- gGGCAACGUUUGUUGGUGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 132990 0.82 0.534022
Target:  5'- cGGCAACGUUUGUUGGCGagGACc--- -3'
miRNA:   3'- -CCGUUGCAAACAACCGCggUUGuaaa -5'
17388 5' -47.7 NC_004367.1 + 133038 1.09 0.015508
Target:  5'- gGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133078 1.1 0.014187
Target:  5'- cGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133118 1.1 0.014187
Target:  5'- cGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133136 0.67 0.998316
Target:  5'- aGGCGGCcaacaaaUGUUGGCaCCAACAa-- -3'
miRNA:   3'- -CCGUUGcaa----ACAACCGcGGUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 133158 0.82 0.534022
Target:  5'- cGGCAACGUUUGUUGGCGagGACc--- -3'
miRNA:   3'- -CCGUUGCAAACAACCGCggUUGuaaa -5'
17388 5' -47.7 NC_004367.1 + 133206 0.84 0.422761
Target:  5'- gGGCAACGUUUGUUGGCGagGACGc-- -3'
miRNA:   3'- -CCGUUGCAAACAACCGCggUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 133224 0.8 0.631952
Target:  5'- aGGCGGCcaacaaaUGUUGGCGCCAACAa-- -3'
miRNA:   3'- -CCGUUGcaa----ACAACCGCGGUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 133254 1.09 0.015508
Target:  5'- gGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133264 0.8 0.631952
Target:  5'- aGGCGGCcaacaaaUGUUGGCGCCAACAa-- -3'
miRNA:   3'- -CCGUUGcaa----ACAACCGCGGUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 133294 0.85 0.385858
Target:  5'- cGGCAACGUUUGUUGGCGaCGACc--- -3'
miRNA:   3'- -CCGUUGCAAACAACCGCgGUUGuaaa -5'
17388 5' -47.7 NC_004367.1 + 133304 0.8 0.631952
Target:  5'- aGGCGGCcaacaaaUGUUGGCGCCAACAa-- -3'
miRNA:   3'- -CCGUUGcaa----ACAACCGCGGUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 133342 1.09 0.015508
Target:  5'- gGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.