miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17388 5' -47.7 NC_004367.1 + 133206 0.84 0.422761
Target:  5'- gGGCAACGUUUGUUGGCGagGACGc-- -3'
miRNA:   3'- -CCGUUGCAAACAACCGCggUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 133254 1.09 0.015508
Target:  5'- gGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133342 1.09 0.015508
Target:  5'- gGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133430 1.09 0.015508
Target:  5'- gGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 132950 1.05 0.027216
Target:  5'- gGGCAACGUUUGUUGGUGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133535 1.05 0.027216
Target:  5'- gGGCAACGUUUGUUGGUGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133575 1.05 0.028031
Target:  5'- cGGCAACGUUUGUUGGUGCCAACGUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133635 0.92 0.161644
Target:  5'- gGGCAACGUUUGUUGGUGgCAACAUUc -3'
miRNA:   3'- -CCGUUGCAAACAACCGCgGUUGUAAa -5'
17388 5' -47.7 NC_004367.1 + 133470 0.87 0.31096
Target:  5'- cGGCAACGUUUGUUaGUGCCAACGUc- -3'
miRNA:   3'- -CCGUUGCAAACAAcCGCGGUUGUAaa -5'
17388 5' -47.7 NC_004367.1 + 133038 1.09 0.015508
Target:  5'- gGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133118 1.1 0.014187
Target:  5'- cGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133078 1.1 0.014187
Target:  5'- cGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 132990 0.82 0.534022
Target:  5'- cGGCAACGUUUGUUGGCGagGACc--- -3'
miRNA:   3'- -CCGUUGCAAACAACCGCggUUGuaaa -5'
17388 5' -47.7 NC_004367.1 + 133809 0.69 0.989907
Target:  5'- uGGCAAUGUUUGUUGGUuuCCGGgGa-- -3'
miRNA:   3'- -CCGUUGCAAACAACCGc-GGUUgUaaa -5'
17388 5' -47.7 NC_004367.1 + 133158 0.82 0.534022
Target:  5'- cGGCAACGUUUGUUGGCGagGACc--- -3'
miRNA:   3'- -CCGUUGCAAACAACCGCggUUGuaaa -5'
17388 5' -47.7 NC_004367.1 + 133695 0.7 0.98682
Target:  5'- -cCAACaUUUGcUGGUGCCAACGUUUu -3'
miRNA:   3'- ccGUUGcAAACaACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 59647 0.68 0.997087
Target:  5'- cGUAACGcaUGUUGuaGCCAAUAUUg -3'
miRNA:   3'- cCGUUGCaaACAACcgCGGUUGUAAa -5'
17388 5' -47.7 NC_004367.1 + 109060 0.66 0.99962
Target:  5'- gGGCAAUGggcaUGUUaccagGGCGCUGAUGUUg -3'
miRNA:   3'- -CCGUUGCaa--ACAA-----CCGCGGUUGUAAa -5'
17388 5' -47.7 NC_004367.1 + 133382 0.82 0.534022
Target:  5'- cGGCAACGUUUGUUGGCGagGACc--- -3'
miRNA:   3'- -CCGUUGCAAACAACCGCggUUGuaaa -5'
17388 5' -47.7 NC_004367.1 + 133746 0.74 0.90744
Target:  5'- uGGcCAACGUUUGUUGGUGCUuuggucACAg-- -3'
miRNA:   3'- -CC-GUUGCAAACAACCGCGGu-----UGUaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.