miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17388 5' -47.7 NC_004367.1 + 133254 1.09 0.015508
Target:  5'- gGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133342 1.09 0.015508
Target:  5'- gGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133430 1.09 0.015508
Target:  5'- gGGCAACGUUUGUUGGCGCCAACAUUUg -3'
miRNA:   3'- -CCGUUGCAAACAACCGCGGUUGUAAA- -5'
17388 5' -47.7 NC_004367.1 + 133136 0.67 0.998316
Target:  5'- aGGCGGCcaacaaaUGUUGGCaCCAACAa-- -3'
miRNA:   3'- -CCGUUGcaa----ACAACCGcGGUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 3120 0.7 0.986648
Target:  5'- aGGCAgagcaaaGCGgguaUGUUGGCGCCAucUAUUg -3'
miRNA:   3'- -CCGU-------UGCaa--ACAACCGCGGUu-GUAAa -5'
17388 5' -47.7 NC_004367.1 + 133224 0.8 0.631952
Target:  5'- aGGCGGCcaacaaaUGUUGGCGCCAACAa-- -3'
miRNA:   3'- -CCGUUGcaa----ACAACCGCGGUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 133264 0.8 0.631952
Target:  5'- aGGCGGCcaacaaaUGUUGGCGCCAACAa-- -3'
miRNA:   3'- -CCGUUGcaa----ACAACCGCGGUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 133304 0.8 0.631952
Target:  5'- aGGCGGCcaacaaaUGUUGGCGCCAACAa-- -3'
miRNA:   3'- -CCGUUGcaa----ACAACCGCGGUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 133440 0.8 0.631952
Target:  5'- aGGCGGCcaacaaaUGUUGGCGCCAACAa-- -3'
miRNA:   3'- -CCGUUGcaa----ACAACCGCGGUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 133528 0.8 0.631952
Target:  5'- aGGCGGCcaacaaaUGUUGGCGCCAACAa-- -3'
miRNA:   3'- -CCGUUGcaa----ACAACCGCGGUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 133616 0.8 0.631952
Target:  5'- aGGCGGCcaacaaaUGUUGGCGCCAACAa-- -3'
miRNA:   3'- -CCGUUGcaa----ACAACCGCGGUUGUaaa -5'
17388 5' -47.7 NC_004367.1 + 74022 0.66 0.999399
Target:  5'- uGGCAAUGa-UGUuaUGGUGUCGGCAg-- -3'
miRNA:   3'- -CCGUUGCaaACA--ACCGCGGUUGUaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.