Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17473 | 3' | -46.8 | NC_004456.1 | + | 26429 | 0.67 | 0.974672 |
Target: 5'- aAAGUCUAUcucuGCGAUAGagGGCCCa -3' miRNA: 3'- gUUCAGGUGauuuUGCUGUU--UCGGGg -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 27612 | 0.74 | 0.694344 |
Target: 5'- uGAGggCCACcgauAACGGCAGAGCCgCCc -3' miRNA: 3'- gUUCa-GGUGauu-UUGCUGUUUCGG-GG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 28175 | 0.66 | 0.982583 |
Target: 5'- uCGAGUCgGCaaccgcGACGACAGuuggcggcGGCCUCu -3' miRNA: 3'- -GUUCAGgUGauu---UUGCUGUU--------UCGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 31186 | 0.72 | 0.795195 |
Target: 5'- gAAGUCCACc-GGACGGCAcAGGCCa- -3' miRNA: 3'- gUUCAGGUGauUUUGCUGU-UUCGGgg -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 32881 | 0.66 | 0.977554 |
Target: 5'- uCAAGcUCCAagccauCGACAAAaugagcGCCCCg -3' miRNA: 3'- -GUUC-AGGUgauuuuGCUGUUU------CGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 34030 | 0.69 | 0.923891 |
Target: 5'- --cGUCUugGCUAGAACaucuGACAGcuGCCCCa -3' miRNA: 3'- guuCAGG--UGAUUUUG----CUGUUu-CGGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 38092 | 0.68 | 0.946669 |
Target: 5'- uCAGGUUgAUU---ACGAUAAAGaCCCCg -3' miRNA: 3'- -GUUCAGgUGAuuuUGCUGUUUC-GGGG- -5' |
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17473 | 3' | -46.8 | NC_004456.1 | + | 42020 | 0.66 | 0.984754 |
Target: 5'- aAGGUCUcgcaacCUGAuACGGuuCAAGGCCCUg -3' miRNA: 3'- gUUCAGGu-----GAUUuUGCU--GUUUCGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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