miRNA display CGI


Results 21 - 28 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17473 3' -46.8 NC_004456.1 + 26429 0.67 0.974672
Target:  5'- aAAGUCUAUcucuGCGAUAGagGGCCCa -3'
miRNA:   3'- gUUCAGGUGauuuUGCUGUU--UCGGGg -5'
17473 3' -46.8 NC_004456.1 + 27612 0.74 0.694344
Target:  5'- uGAGggCCACcgauAACGGCAGAGCCgCCc -3'
miRNA:   3'- gUUCa-GGUGauu-UUGCUGUUUCGG-GG- -5'
17473 3' -46.8 NC_004456.1 + 28175 0.66 0.982583
Target:  5'- uCGAGUCgGCaaccgcGACGACAGuuggcggcGGCCUCu -3'
miRNA:   3'- -GUUCAGgUGauu---UUGCUGUU--------UCGGGG- -5'
17473 3' -46.8 NC_004456.1 + 31186 0.72 0.795195
Target:  5'- gAAGUCCACc-GGACGGCAcAGGCCa- -3'
miRNA:   3'- gUUCAGGUGauUUUGCUGU-UUCGGgg -5'
17473 3' -46.8 NC_004456.1 + 32881 0.66 0.977554
Target:  5'- uCAAGcUCCAagccauCGACAAAaugagcGCCCCg -3'
miRNA:   3'- -GUUC-AGGUgauuuuGCUGUUU------CGGGG- -5'
17473 3' -46.8 NC_004456.1 + 34030 0.69 0.923891
Target:  5'- --cGUCUugGCUAGAACaucuGACAGcuGCCCCa -3'
miRNA:   3'- guuCAGG--UGAUUUUG----CUGUUu-CGGGG- -5'
17473 3' -46.8 NC_004456.1 + 38092 0.68 0.946669
Target:  5'- uCAGGUUgAUU---ACGAUAAAGaCCCCg -3'
miRNA:   3'- -GUUCAGgUGAuuuUGCUGUUUC-GGGG- -5'
17473 3' -46.8 NC_004456.1 + 42020 0.66 0.984754
Target:  5'- aAGGUCUcgcaacCUGAuACGGuuCAAGGCCCUg -3'
miRNA:   3'- gUUCAGGu-----GAUUuUGCU--GUUUCGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.