miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17473 5' -49.4 NC_004456.1 + 2176 0.71 0.667729
Target:  5'- --uGGGCCCacUGGAAAgGCGGAuGAUCc -3'
miRNA:   3'- aguCCCGGG--ACCUUUgCGUUUuUUGG- -5'
17473 5' -49.4 NC_004456.1 + 7025 0.71 0.713867
Target:  5'- --cGGGCgCUGGcgcuACGCuuAAAACCu -3'
miRNA:   3'- aguCCCGgGACCuu--UGCGuuUUUUGG- -5'
17473 5' -49.4 NC_004456.1 + 12487 1.15 0.001218
Target:  5'- gUCAGGGCCCUGGAAACGCAAAAAACCg -3'
miRNA:   3'- -AGUCCCGGGACCUUUGCGUUUUUUGG- -5'
17473 5' -49.4 NC_004456.1 + 14224 0.67 0.891202
Target:  5'- uUCAcGGGCCUUGGcuuCGguAAu-GCCa -3'
miRNA:   3'- -AGU-CCCGGGACCuuuGCguUUuuUGG- -5'
17473 5' -49.4 NC_004456.1 + 21339 0.73 0.562867
Target:  5'- -gAGGGCCaauuuaaUGGAAugGCAAcccuuuuGACCa -3'
miRNA:   3'- agUCCCGGg------ACCUUugCGUUuu-----UUGG- -5'
17473 5' -49.4 NC_004456.1 + 28202 0.66 0.931759
Target:  5'- gCGGcGGCCuCUGGuguCGCAAcuauggcGACCg -3'
miRNA:   3'- aGUC-CCGG-GACCuuuGCGUUuu-----UUGG- -5'
17473 5' -49.4 NC_004456.1 + 31912 0.73 0.551395
Target:  5'- ---cGGCaCCUGGAAAUcugGCGAAAAACCc -3'
miRNA:   3'- agucCCG-GGACCUUUG---CGUUUUUUGG- -5'
17473 5' -49.4 NC_004456.1 + 33429 0.67 0.875262
Target:  5'- cCGGGGCUCagucGAAGgcgaaGCAGGAGGCCa -3'
miRNA:   3'- aGUCCCGGGac--CUUUg----CGUUUUUUGG- -5'
17473 5' -49.4 NC_004456.1 + 35261 0.66 0.919479
Target:  5'- gUCuGGuGCCuuuucccuCUGGGAcGCGCuuAAAACCg -3'
miRNA:   3'- -AGuCC-CGG--------GACCUU-UGCGuuUUUUGG- -5'
17473 5' -49.4 NC_004456.1 + 35447 0.67 0.89799
Target:  5'- gUCAGGGCCUaaucuugagcaauUGGccGAgGCugAAAAGACCc -3'
miRNA:   3'- -AGUCCCGGG-------------ACCu-UUgCG--UUUUUUGG- -5'
17473 5' -49.4 NC_004456.1 + 35934 0.67 0.875262
Target:  5'- gCGGaGGCCCUGGcaagAGACuuAGcAAACCa -3'
miRNA:   3'- aGUC-CCGGGACC----UUUGcgUUuUUUGG- -5'
17473 5' -49.4 NC_004456.1 + 38727 0.69 0.820914
Target:  5'- cCuGGGCgCUGGAAAUGau---GACCa -3'
miRNA:   3'- aGuCCCGgGACCUUUGCguuuuUUGG- -5'
17473 5' -49.4 NC_004456.1 + 39572 0.67 0.908757
Target:  5'- -gAGGGCUccagauuaacccaaaCUGaGAAAaucaGCAAGAAGCCc -3'
miRNA:   3'- agUCCCGG---------------GAC-CUUUg---CGUUUUUUGG- -5'
17473 5' -49.4 NC_004456.1 + 41942 0.67 0.883377
Target:  5'- cUCAGGGCCUU-GAAcCGUAucagguugcGAGACCu -3'
miRNA:   3'- -AGUCCCGGGAcCUUuGCGUu--------UUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.