miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17482 5' -54.7 NC_004456.1 + 24553 1.12 0.000438
Target:  5'- gGUGAUAUGCUCCACCACGGCCUCUGCa -3'
miRNA:   3'- -CACUAUACGAGGUGGUGCCGGAGACG- -5'
17482 5' -54.7 NC_004456.1 + 26309 0.73 0.290183
Target:  5'- gGUGAccUGCUCCAgCAUGGCUUCgGUu -3'
miRNA:   3'- -CACUauACGAGGUgGUGCCGGAGaCG- -5'
17482 5' -54.7 NC_004456.1 + 26681 0.72 0.313382
Target:  5'- -aGAUAaGCUCUGCCAgccCGGCCUCaGUg -3'
miRNA:   3'- caCUAUaCGAGGUGGU---GCCGGAGaCG- -5'
17482 5' -54.7 NC_004456.1 + 26084 0.68 0.523403
Target:  5'- uUGAUAUGCUCCGgCCAgCGGUCg---- -3'
miRNA:   3'- cACUAUACGAGGU-GGU-GCCGGagacg -5'
17482 5' -54.7 NC_004456.1 + 22930 0.68 0.534339
Target:  5'- uUGAUGgguaGCUUUACuCACGGCaCUCUcGCu -3'
miRNA:   3'- cACUAUa---CGAGGUG-GUGCCG-GAGA-CG- -5'
17482 5' -54.7 NC_004456.1 + 15179 0.67 0.578805
Target:  5'- uUGGUGUGCauaagguuggCCGCUccaguaGCGGCCagCUGCu -3'
miRNA:   3'- cACUAUACGa---------GGUGG------UGCCGGa-GACG- -5'
17482 5' -54.7 NC_004456.1 + 10553 0.67 0.612674
Target:  5'- uUGuuuUAUGgUCCACC-UGGCCUUccggUGCa -3'
miRNA:   3'- cACu--AUACgAGGUGGuGCCGGAG----ACG- -5'
17482 5' -54.7 NC_004456.1 + 10140 0.67 0.612674
Target:  5'- uUGuuuUAUGgUCCACC-UGGCCUUccggUGCa -3'
miRNA:   3'- cACu--AUACgAGGUGGuGCCGGAG----ACG- -5'
17482 5' -54.7 NC_004456.1 + 12223 0.66 0.624013
Target:  5'- -gGAUAaaauagcccgcuUGC-CCGCCAUuucaGCCUCUGCc -3'
miRNA:   3'- caCUAU------------ACGaGGUGGUGc---CGGAGACG- -5'
17482 5' -54.7 NC_004456.1 + 24838 0.66 0.63536
Target:  5'- ---cUcgGCUCCcaacggGCCAaaGCCUCUGCc -3'
miRNA:   3'- cacuAuaCGAGG------UGGUgcCGGAGACG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.