miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17489 5' -53.5 NC_004456.1 + 36486 0.66 0.72512
Target:  5'- uGguCUGGCUGAguauGGCCcacGGCuuCCCGCu -3'
miRNA:   3'- -CguGGCCGAUU----UCGGuu-UCGu-GGGUG- -5'
17489 5' -53.5 NC_004456.1 + 5247 0.66 0.713978
Target:  5'- cGCGCa-GCgaAAGGCUcAGGUACCCGCu -3'
miRNA:   3'- -CGUGgcCGa-UUUCGGuUUCGUGGGUG- -5'
17489 5' -53.5 NC_004456.1 + 35695 0.66 0.713978
Target:  5'- uGUACCGGCUccgcuGCCGcuggcauGGCugCgGCa -3'
miRNA:   3'- -CGUGGCCGAuuu--CGGUu------UCGugGgUG- -5'
17489 5' -53.5 NC_004456.1 + 18472 0.66 0.701621
Target:  5'- gGCugCGGCcacccaaguGGCCAcGGCauugguuGCCCAUg -3'
miRNA:   3'- -CGugGCCGauu------UCGGUuUCG-------UGGGUG- -5'
17489 5' -53.5 NC_004456.1 + 16856 0.66 0.691443
Target:  5'- aGCuCCGGCUGAccuucuGGCCAucggAAGUuugaCCACu -3'
miRNA:   3'- -CGuGGCCGAUU------UCGGU----UUCGug--GGUG- -5'
17489 5' -53.5 NC_004456.1 + 41619 0.66 0.683492
Target:  5'- uGCACCGGCUucaugcgcuAucaccuucuaaaaauGGCCGcauaaggAGGUGCCCAUg -3'
miRNA:   3'- -CGUGGCCGAu--------U---------------UCGGU-------UUCGUGGGUG- -5'
17489 5' -53.5 NC_004456.1 + 27617 0.66 0.680076
Target:  5'- ---gCGGCUGAgGGCCAccgauaacggcaGAGCcGCCCGCc -3'
miRNA:   3'- cgugGCCGAUU-UCGGU------------UUCG-UGGGUG- -5'
17489 5' -53.5 NC_004456.1 + 28900 0.67 0.666371
Target:  5'- aGC-CCGGCguucGAGCCAuuguuccaguuGCcCCCGCg -3'
miRNA:   3'- -CGuGGCCGau--UUCGGUuu---------CGuGGGUG- -5'
17489 5' -53.5 NC_004456.1 + 38851 0.67 0.65032
Target:  5'- gGCGCUGGCaauauUGAAGgaauacgcgaagugaCCAcgcuGGCACCCAUg -3'
miRNA:   3'- -CGUGGCCG-----AUUUC---------------GGUu---UCGUGGGUG- -5'
17489 5' -53.5 NC_004456.1 + 6870 0.68 0.599784
Target:  5'- gGCACCuGGaCUGAAucaCCAGAGCAgCCUGCc -3'
miRNA:   3'- -CGUGG-CC-GAUUUc--GGUUUCGU-GGGUG- -5'
17489 5' -53.5 NC_004456.1 + 19129 0.68 0.576951
Target:  5'- cGUACCggGGUUGAGGCCGGugauucGCuuCCCACc -3'
miRNA:   3'- -CGUGG--CCGAUUUCGGUUu-----CGu-GGGUG- -5'
17489 5' -53.5 NC_004456.1 + 8828 0.68 0.554317
Target:  5'- cCGCCuuguuGCUGuGGCUGAGGCGCCUGCu -3'
miRNA:   3'- cGUGGc----CGAUuUCGGUUUCGUGGGUG- -5'
17489 5' -53.5 NC_004456.1 + 33384 0.69 0.531951
Target:  5'- uGCGCCaGGCacugaaccGAGCCGGAGUGUCCACc -3'
miRNA:   3'- -CGUGG-CCGau------UUCGGUUUCGUGGGUG- -5'
17489 5' -53.5 NC_004456.1 + 17619 0.69 0.499047
Target:  5'- -aACCGGau--AGCC-AAGCGCCUGCg -3'
miRNA:   3'- cgUGGCCgauuUCGGuUUCGUGGGUG- -5'
17489 5' -53.5 NC_004456.1 + 29975 0.69 0.499047
Target:  5'- -gGCUGGCcaugcGGGCCAcgccAGCACCUACa -3'
miRNA:   3'- cgUGGCCGau---UUCGGUu---UCGUGGGUG- -5'
17489 5' -53.5 NC_004456.1 + 28325 0.7 0.488279
Target:  5'- aGC-CCGGCgcucGAGCCAuuguuccaguAGCcCCCGCg -3'
miRNA:   3'- -CGuGGCCGau--UUCGGUu---------UCGuGGGUG- -5'
17489 5' -53.5 NC_004456.1 + 5999 0.7 0.488279
Target:  5'- uGguCCGGUgaaaUGAAGCUGAGGCACUCuuGCa -3'
miRNA:   3'- -CguGGCCG----AUUUCGGUUUCGUGGG--UG- -5'
17489 5' -53.5 NC_004456.1 + 20242 0.7 0.486138
Target:  5'- cGCACCGGCUgaacuggucaggaauAccugaucacaacagcAGGCCAAGGCAUaaGCa -3'
miRNA:   3'- -CGUGGCCGA---------------U---------------UUCGGUUUCGUGggUG- -5'
17489 5' -53.5 NC_004456.1 + 29051 0.7 0.477621
Target:  5'- uGUuCCGGCUAuGGCCGAggaggaGGCAUCCu- -3'
miRNA:   3'- -CGuGGCCGAUuUCGGUU------UCGUGGGug -5'
17489 5' -53.5 NC_004456.1 + 13942 0.71 0.416283
Target:  5'- aGCGCCGuCUGGagguGGCCAuuGC-CCCGCu -3'
miRNA:   3'- -CGUGGCcGAUU----UCGGUuuCGuGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.