Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
176 | 5' | -65.9 | AC_000007.1 | + | 3794 | 0.66 | 0.169688 |
Target: 5'- aGCCGC-UGCAgCCAccGCCCGCGGg-- -3' miRNA: 3'- aCGGCGcGUGUgGGU--CGGGCGCCggu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 5398 | 0.66 | 0.15669 |
Target: 5'- cUGCCG-GUcuuCGCCCuGCgCGuCGGCCAg -3' miRNA: 3'- -ACGGCgCGu--GUGGGuCGgGC-GCCGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 6389 | 0.66 | 0.152561 |
Target: 5'- cGuuGCGCGCGaauacgUgCAGCUaaacauCGCGGCCAa -3' miRNA: 3'- aCggCGCGUGU------GgGUCGG------GCGCCGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 6446 | 0.66 | 0.165252 |
Target: 5'- uUGgCGCGUGCACCUgguGCCCGaCGaGCgCAc -3' miRNA: 3'- -ACgGCGCGUGUGGGu--CGGGC-GC-CG-GU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 6625 | 0.66 | 0.15669 |
Target: 5'- -uUCGaCGCGCGCCUgcuGCCCGgGGUCu -3' miRNA: 3'- acGGC-GCGUGUGGGu--CGGGCgCCGGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 7870 | 0.7 | 0.072718 |
Target: 5'- cGCCGCGCGagACCUAGCC-GUGGaCCu -3' miRNA: 3'- aCGGCGCGUg-UGGGUCGGgCGCC-GGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 8268 | 0.71 | 0.060926 |
Target: 5'- cGCCGCGCGaGCCCAaaguccagauguccGCgCGCGGCg- -3' miRNA: 3'- aCGGCGCGUgUGGGU--------------CGgGCGCCGgu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 8563 | 0.67 | 0.129803 |
Target: 5'- cGCCGCGCgguaccguagucGCGCCgCGGggaUGCGGCCu -3' miRNA: 3'- aCGGCGCG------------UGUGG-GUCgg-GCGCCGGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 8715 | 0.67 | 0.129803 |
Target: 5'- -uCCGCGCGCAgcaccagcUCCuGCCCGCGcGCg- -3' miRNA: 3'- acGGCGCGUGU--------GGGuCGGGCGC-CGgu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 10856 | 0.69 | 0.090873 |
Target: 5'- cGCCGCGCGCGgCCAGU----GGCCAa -3' miRNA: 3'- aCGGCGCGUGUgGGUCGggcgCCGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 11513 | 0.69 | 0.088388 |
Target: 5'- gUGUgCGCGCGCGggacuaauCCCGGUCCGCGcGUCGg -3' miRNA: 3'- -ACG-GCGCGUGU--------GGGUCGGGCGC-CGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 11544 | 0.66 | 0.174231 |
Target: 5'- cGUaCGCGguUACCaGGUCgGCGGCCGc -3' miRNA: 3'- aCG-GCGCguGUGGgUCGGgCGCCGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 12019 | 0.66 | 0.152561 |
Target: 5'- gGCgGCGCGaGCUCAGCgaCCGCGaGCUg -3' miRNA: 3'- aCGgCGCGUgUGGGUCG--GGCGC-CGGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 12081 | 0.68 | 0.110216 |
Target: 5'- aGCuCGCGguCGCUgAGCUCGCGccGCCGg -3' miRNA: 3'- aCG-GCGCguGUGGgUCGGGCGC--CGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 12246 | 0.71 | 0.065 |
Target: 5'- uUGCCaGCGCGCGCgggugccaccgCCAGCCCaggucCGGCCc -3' miRNA: 3'- -ACGG-CGCGUGUG-----------GGUCGGGc----GCCGGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 12535 | 0.7 | 0.083609 |
Target: 5'- gGCCGaaaacaggGC-CAUCCGGCCCGaugaGGCCGg -3' miRNA: 3'- aCGGCg-------CGuGUGGGUCGGGCg---CCGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 12729 | 0.72 | 0.056458 |
Target: 5'- cUGCUGCGCGCGCUCAcgcuGCgCCaCGGCCu -3' miRNA: 3'- -ACGGCGCGUGUGGGU----CG-GGcGCCGGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 13204 | 0.68 | 0.116416 |
Target: 5'- cUGcCCGUGUccuccuGC-CCCAGCgCGCGGCUg -3' miRNA: 3'- -AC-GGCGCG------UGuGGGUCGgGCGCCGGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 13897 | 0.66 | 0.148531 |
Target: 5'- gGcCCGCGCcCGCCCA-CCCGUcGUCAa -3' miRNA: 3'- aC-GGCGCGuGUGGGUcGGGCGcCGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 15975 | 0.66 | 0.169688 |
Target: 5'- -aCCGCGCGC-CCUggGGCgcgcacaaaCGCGGCCGc -3' miRNA: 3'- acGGCGCGUGuGGG--UCGg--------GCGCCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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