Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
176 | 5' | -65.9 | AC_000007.1 | + | 3794 | 0.66 | 0.169688 |
Target: 5'- aGCCGC-UGCAgCCAccGCCCGCGGg-- -3' miRNA: 3'- aCGGCGcGUGUgGGU--CGGGCGCCggu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 21639 | 0.67 | 0.133365 |
Target: 5'- gGuCCGUGUGCACCagccGCaCCGCGGCg- -3' miRNA: 3'- aC-GGCGCGUGUGGgu--CG-GGCGCCGgu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 13897 | 0.66 | 0.148531 |
Target: 5'- gGcCCGCGCcCGCCCA-CCCGUcGUCAa -3' miRNA: 3'- aC-GGCGCGuGUGGGUcGGGCGcCGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 12019 | 0.66 | 0.152561 |
Target: 5'- gGCgGCGCGaGCUCAGCgaCCGCGaGCUg -3' miRNA: 3'- aCGgCGCGUgUGGGUCG--GGCGC-CGGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 23234 | 0.66 | 0.156273 |
Target: 5'- aGCgGUGCagccacaACGCgCAGCCCGUGGgCu -3' miRNA: 3'- aCGgCGCG-------UGUGgGUCGGGCGCCgGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 5398 | 0.66 | 0.15669 |
Target: 5'- cUGCCG-GUcuuCGCCCuGCgCGuCGGCCAg -3' miRNA: 3'- -ACGGCgCGu--GUGGGuCGgGC-GCCGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 16077 | 0.66 | 0.160919 |
Target: 5'- cGCCGC-CACcaguguCCaCAGUggaCGCGGCCAu -3' miRNA: 3'- aCGGCGcGUGu-----GG-GUCGg--GCGCCGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 24629 | 0.66 | 0.160919 |
Target: 5'- cUGCCGUGCcaACCgCAGCCgaGCGGaCAa -3' miRNA: 3'- -ACGGCGCGugUGG-GUCGGg-CGCCgGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 26857 | 0.66 | 0.16924 |
Target: 5'- cGCUGCGUcugGCGCCCAacgaacccguaucGaCCCGCGaGCUu -3' miRNA: 3'- aCGGCGCG---UGUGGGU-------------C-GGGCGC-CGGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 16421 | 0.67 | 0.133365 |
Target: 5'- gUGcCCGUGCGCACCCGcccCCCGCGcaaCUAg -3' miRNA: 3'- -AC-GGCGCGUGUGGGUc--GGGCGCc--GGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 17838 | 0.67 | 0.129803 |
Target: 5'- cGCCGCgGCgauugGCGCCguGCCCggaauugcauccGUGGCCu -3' miRNA: 3'- aCGGCG-CG-----UGUGGguCGGG------------CGCCGGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 16330 | 0.68 | 0.119637 |
Target: 5'- gGCCGC-CGCAgC-AG-CCGCGGCCAu -3' miRNA: 3'- aCGGCGcGUGUgGgUCgGGCGCCGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 8268 | 0.71 | 0.060926 |
Target: 5'- cGCCGCGCGaGCCCAaaguccagauguccGCgCGCGGCg- -3' miRNA: 3'- aCGGCGCGUgUGGGU--------------CGgGCGCCGgu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 18601 | 0.71 | 0.068755 |
Target: 5'- aGCCGCGCgucccuGCGCCguGCCgccaGCGGuCCGc -3' miRNA: 3'- aCGGCGCG------UGUGGguCGGg---CGCC-GGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 12535 | 0.7 | 0.083609 |
Target: 5'- gGCCGaaaacaggGC-CAUCCGGCCCGaugaGGCCGg -3' miRNA: 3'- aCGGCg-------CGuGUGGGUCGGGCg---CCGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 17267 | 0.69 | 0.096045 |
Target: 5'- aUGCCGCgGUGCAggCGGCCgcUGCGGCCGc -3' miRNA: 3'- -ACGGCG-CGUGUggGUCGG--GCGCCGGU- -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 17518 | 0.69 | 0.098734 |
Target: 5'- cGCCGuCGC-CGuCgCCAGCCCGUgcuGGCCc -3' miRNA: 3'- aCGGC-GCGuGU-G-GGUCGGGCG---CCGGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 16184 | 0.68 | 0.106939 |
Target: 5'- cGCCGCcgacccgGCACugCC-GCCCaacgcgcggcgGCGGCCc -3' miRNA: 3'- aCGGCG-------CGUGugGGuCGGG-----------CGCCGGu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 17758 | 0.68 | 0.110216 |
Target: 5'- cGUCGUGCGCACCa--CCgGCGGCg- -3' miRNA: 3'- aCGGCGCGUGUGGgucGGgCGCCGgu -5' |
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176 | 5' | -65.9 | AC_000007.1 | + | 21684 | 0.68 | 0.113277 |
Target: 5'- -cCUGCGCACGCCCuucucGGCCgGCaacGCCAc -3' miRNA: 3'- acGGCGCGUGUGGG-----UCGGgCGc--CGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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