miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17604 3' -46.3 NC_004466.2 + 39932 0.66 0.992452
Target:  5'- cGGUAACACC----GGCGGCucccuugGGugCGGu -3'
miRNA:   3'- -CCAUUGUGGuauuCUGUUG-------UCugGCC- -5'
17604 3' -46.3 NC_004466.2 + 88 0.66 0.992214
Target:  5'- aGGacAgACCAUAAcGACGACacuaacgcggaaagGGGCCGGc -3'
miRNA:   3'- -CCauUgUGGUAUU-CUGUUG--------------UCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 2252 0.66 0.991332
Target:  5'- gGGUAuuCGCCucAAGGCAGCccaggauauccuGGACCGa -3'
miRNA:   3'- -CCAUu-GUGGuaUUCUGUUG------------UCUGGCc -5'
17604 3' -46.3 NC_004466.2 + 33590 0.66 0.991332
Target:  5'- cGU-ACACCGUAAGAUcACGGuuCCGu -3'
miRNA:   3'- cCAuUGUGGUAUUCUGuUGUCu-GGCc -5'
17604 3' -46.3 NC_004466.2 + 44671 0.66 0.989939
Target:  5'- cGUAuCGCCGUGAucCAGC-GACUGGa -3'
miRNA:   3'- cCAUuGUGGUAUUcuGUUGuCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 40700 0.67 0.988376
Target:  5'- gGGUccgcGACACC-UGGGGCAaGCuGuGCCGGg -3'
miRNA:   3'- -CCA----UUGUGGuAUUCUGU-UGuC-UGGCC- -5'
17604 3' -46.3 NC_004466.2 + 29957 0.67 0.987351
Target:  5'- uGGUAACACCGggcuaguguucaccAAGuACAACccuGACaCGGg -3'
miRNA:   3'- -CCAUUGUGGUa-------------UUC-UGUUGu--CUG-GCC- -5'
17604 3' -46.3 NC_004466.2 + 22353 0.67 0.98663
Target:  5'- uGGUGACGCUGUAGGcgGCGAagaGGAUUGa -3'
miRNA:   3'- -CCAUUGUGGUAUUC--UGUUg--UCUGGCc -5'
17604 3' -46.3 NC_004466.2 + 13985 0.67 0.98663
Target:  5'- uGGUAACGCCAUGcaGGuuGAU--GCUGGa -3'
miRNA:   3'- -CCAUUGUGGUAU--UCugUUGucUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 32368 0.67 0.984691
Target:  5'- aGGUAGCGCCcugGAGGCAuauaccCAGGCa-- -3'
miRNA:   3'- -CCAUUGUGGua-UUCUGUu-----GUCUGgcc -5'
17604 3' -46.3 NC_004466.2 + 14353 0.68 0.980178
Target:  5'- --aGAgGCCAUuAGaACAACAGACCc- -3'
miRNA:   3'- ccaUUgUGGUAuUC-UGUUGUCUGGcc -5'
17604 3' -46.3 NC_004466.2 + 26282 0.68 0.977581
Target:  5'- uGGUGAUcCUagAUGAGAagguaCGACGGGCUGGa -3'
miRNA:   3'- -CCAUUGuGG--UAUUCU-----GUUGUCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 4498 0.68 0.971649
Target:  5'- aGG-GACGuCCAaGAGACcgUAGACUGGa -3'
miRNA:   3'- -CCaUUGU-GGUaUUCUGuuGUCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 29515 0.68 0.971649
Target:  5'- aGUGuC-CCAUAGGACGGuCAGGCCa- -3'
miRNA:   3'- cCAUuGuGGUAUUCUGUU-GUCUGGcc -5'
17604 3' -46.3 NC_004466.2 + 37414 0.68 0.967233
Target:  5'- uGGUGAUGCCGU-GGugGaauugcucgaaggaGCuGGCCGGa -3'
miRNA:   3'- -CCAUUGUGGUAuUCugU--------------UGuCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 11338 0.69 0.964663
Target:  5'- uGGUAGgGuCCGUuGGAuccCAAgAGGCCGGg -3'
miRNA:   3'- -CCAUUgU-GGUAuUCU---GUUgUCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 35786 0.69 0.956552
Target:  5'- -uUGACgGCCAaGAGACGAC-GACCGa -3'
miRNA:   3'- ccAUUG-UGGUaUUCUGUUGuCUGGCc -5'
17604 3' -46.3 NC_004466.2 + 5534 0.69 0.953891
Target:  5'- cGGggAAguCUAUGGGAUgcuugaccgccuugaGGCAGACCGGg -3'
miRNA:   3'- -CCa-UUguGGUAUUCUG---------------UUGUCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 22114 0.69 0.952056
Target:  5'- cGGaacCACCGUAAGGCc---GACCGGa -3'
miRNA:   3'- -CCauuGUGGUAUUCUGuuguCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 1024 0.7 0.93101
Target:  5'- --gGAUACCAUAAGGC--UAGuCCGGg -3'
miRNA:   3'- ccaUUGUGGUAUUCUGuuGUCuGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.