miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17604 3' -46.3 NC_004466.2 + 40151 0.81 0.418676
Target:  5'- cGGUGACGCCAgaagugaGGGGCGACAuGCUGGg -3'
miRNA:   3'- -CCAUUGUGGUa------UUCUGUUGUcUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 39932 0.66 0.992452
Target:  5'- cGGUAACACC----GGCGGCucccuugGGugCGGu -3'
miRNA:   3'- -CCAUUGUGGuauuCUGUUG-------UCugGCC- -5'
17604 3' -46.3 NC_004466.2 + 2252 0.66 0.991332
Target:  5'- gGGUAuuCGCCucAAGGCAGCccaggauauccuGGACCGa -3'
miRNA:   3'- -CCAUu-GUGGuaUUCUGUUG------------UCUGGCc -5'
17604 3' -46.3 NC_004466.2 + 33590 0.66 0.991332
Target:  5'- cGU-ACACCGUAAGAUcACGGuuCCGu -3'
miRNA:   3'- cCAuUGUGGUAUUCUGuUGUCu-GGCc -5'
17604 3' -46.3 NC_004466.2 + 22353 0.67 0.98663
Target:  5'- uGGUGACGCUGUAGGcgGCGAagaGGAUUGa -3'
miRNA:   3'- -CCAUUGUGGUAUUC--UGUUg--UCUGGCc -5'
17604 3' -46.3 NC_004466.2 + 13985 0.67 0.98663
Target:  5'- uGGUAACGCCAUGcaGGuuGAU--GCUGGa -3'
miRNA:   3'- -CCAUUGUGGUAU--UCugUUGucUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 4498 0.68 0.971649
Target:  5'- aGG-GACGuCCAaGAGACcgUAGACUGGa -3'
miRNA:   3'- -CCaUUGU-GGUaUUCUGuuGUCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 29515 0.68 0.971649
Target:  5'- aGUGuC-CCAUAGGACGGuCAGGCCa- -3'
miRNA:   3'- cCAUuGuGGUAUUCUGUU-GUCUGGcc -5'
17604 3' -46.3 NC_004466.2 + 37414 0.68 0.967233
Target:  5'- uGGUGAUGCCGU-GGugGaauugcucgaaggaGCuGGCCGGa -3'
miRNA:   3'- -CCAUUGUGGUAuUCugU--------------UGuCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 35786 0.69 0.956552
Target:  5'- -uUGACgGCCAaGAGACGAC-GACCGa -3'
miRNA:   3'- ccAUUG-UGGUaUUCUGUUGuCUGGCc -5'
17604 3' -46.3 NC_004466.2 + 5534 0.69 0.953891
Target:  5'- cGGggAAguCUAUGGGAUgcuugaccgccuugaGGCAGACCGGg -3'
miRNA:   3'- -CCa-UUguGGUAUUCUG---------------UUGUCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 22114 0.69 0.952056
Target:  5'- cGGaacCACCGUAAGGCc---GACCGGa -3'
miRNA:   3'- -CCauuGUGGUAUUCUGuuguCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 16610 0.73 0.828996
Target:  5'- cGGUGGCACUAUugcuacuguuGGugAGCuGACUGGu -3'
miRNA:   3'- -CCAUUGUGGUAu---------UCugUUGuCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 37023 0.76 0.664091
Target:  5'- cGGUAcucgACACCGUAGGGCuuguagcGGCAGgcACCGGc -3'
miRNA:   3'- -CCAU----UGUGGUAUUCUG-------UUGUC--UGGCC- -5'
17604 3' -46.3 NC_004466.2 + 26282 0.68 0.977581
Target:  5'- uGGUGAUcCUagAUGAGAagguaCGACGGGCUGGa -3'
miRNA:   3'- -CCAUUGuGG--UAUUCU-----GUUGUCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 11338 0.69 0.964663
Target:  5'- uGGUAGgGuCCGUuGGAuccCAAgAGGCCGGg -3'
miRNA:   3'- -CCAUUgU-GGUAuUCU---GUUgUCUGGCC- -5'
17604 3' -46.3 NC_004466.2 + 1024 0.7 0.93101
Target:  5'- --gGAUACCAUAAGGC--UAGuCCGGg -3'
miRNA:   3'- ccaUUGUGGUAUUCUGuuGUCuGGCC- -5'
17604 3' -46.3 NC_004466.2 + 17049 0.77 0.630096
Target:  5'- aGGccAGCACCAccUAGGACAGCAGuCCaGGg -3'
miRNA:   3'- -CCa-UUGUGGU--AUUCUGUUGUCuGG-CC- -5'
17604 3' -46.3 NC_004466.2 + 3123 0.81 0.398854
Target:  5'- gGGUAACgACCAgUAAGAUGACAGGCCa- -3'
miRNA:   3'- -CCAUUG-UGGU-AUUCUGUUGUCUGGcc -5'
17604 3' -46.3 NC_004466.2 + 88 0.66 0.992214
Target:  5'- aGGacAgACCAUAAcGACGACacuaacgcggaaagGGGCCGGc -3'
miRNA:   3'- -CCauUgUGGUAUU-CUGUUG--------------UCUGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.