miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17618 3' -51.4 NC_004466.2 + 42390 0.66 0.842701
Target:  5'- cCAUCgguucggacCUCCgGCCUaggguguguacuaUGacGCCCGCCCa -3'
miRNA:   3'- aGUAGaa-------GAGGgUGGA-------------AU--UGGGUGGG- -5'
17618 3' -51.4 NC_004466.2 + 34395 0.68 0.775193
Target:  5'- cCAUCagcUCUCCgguCACCUUucucGACCUACCg -3'
miRNA:   3'- aGUAGa--AGAGG---GUGGAA----UUGGGUGGg -5'
17618 3' -51.4 NC_004466.2 + 26368 0.68 0.764685
Target:  5'- --uUCggCUUCCugCUUAACCCuCUCa -3'
miRNA:   3'- aguAGaaGAGGGugGAAUUGGGuGGG- -5'
17618 3' -51.4 NC_004466.2 + 14373 0.68 0.764685
Target:  5'- gUCGUCaaggCUCCUACCgcccugUCCACCUg -3'
miRNA:   3'- -AGUAGaa--GAGGGUGGaauu--GGGUGGG- -5'
17618 3' -51.4 NC_004466.2 + 36287 0.7 0.658189
Target:  5'- uUCAUCUUugacaaccaguuggcCUUCCACCagaucACCCACCa -3'
miRNA:   3'- -AGUAGAA---------------GAGGGUGGaau--UGGGUGGg -5'
17618 3' -51.4 NC_004466.2 + 37975 0.7 0.653624
Target:  5'- cCAgagCUUCU-CCACg--GGCCCACCCu -3'
miRNA:   3'- aGUa--GAAGAgGGUGgaaUUGGGUGGG- -5'
17618 3' -51.4 NC_004466.2 + 20073 0.71 0.619329
Target:  5'- -gGUUcUCUCCaacagaacUACCUUGACCCACgCCu -3'
miRNA:   3'- agUAGaAGAGG--------GUGGAAUUGGGUG-GG- -5'
17618 3' -51.4 NC_004466.2 + 44943 0.72 0.507248
Target:  5'- cUCAagg-CUCCCGCCggcUGGCCCugGCCCa -3'
miRNA:   3'- -AGUagaaGAGGGUGGa--AUUGGG--UGGG- -5'
17618 3' -51.4 NC_004466.2 + 31639 0.73 0.475193
Target:  5'- ---aCUUCUCCUACCccuaucUGACCUAUCCg -3'
miRNA:   3'- aguaGAAGAGGGUGGa-----AUUGGGUGGG- -5'
17618 3' -51.4 NC_004466.2 + 9284 0.74 0.444181
Target:  5'- aUAUCUUCUCCCACUaugUUAACUacaacuaccaGCCCc -3'
miRNA:   3'- aGUAGAAGAGGGUGG---AAUUGGg---------UGGG- -5'
17618 3' -51.4 NC_004466.2 + 30154 1.14 0.000913
Target:  5'- uUCAUCUUCUCCCACCUUAACCCACCCa -3'
miRNA:   3'- -AGUAGAAGAGGGUGGAAUUGGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.