miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17620 5' -53.7 NC_004466.2 + 25228 0.66 0.759057
Target:  5'- aGCCCCCGgaUC-UCCUGcuuUGAUUCCa -3'
miRNA:   3'- aCGGGGGU--AGaAGGACuu-GUUAGGGg -5'
17620 5' -53.7 NC_004466.2 + 33378 0.66 0.747377
Target:  5'- gGCCCCgAUCgUCCUGGccgaaGCGGUggauaugCUCCa -3'
miRNA:   3'- aCGGGGgUAGaAGGACU-----UGUUA-------GGGG- -5'
17620 5' -53.7 NC_004466.2 + 36688 0.67 0.704876
Target:  5'- cGUCgCCAUCUUCCU---CGGUgCCCu -3'
miRNA:   3'- aCGGgGGUAGAAGGAcuuGUUAgGGG- -5'
17620 5' -53.7 NC_004466.2 + 40331 0.67 0.693764
Target:  5'- gGCCUCCAUCUUCUacGGGCucuucuUCCUg -3'
miRNA:   3'- aCGGGGGUAGAAGGa-CUUGuu----AGGGg -5'
17620 5' -53.7 NC_004466.2 + 26361 0.67 0.682591
Target:  5'- aGCCCCUuucggCUUCCUGcuUAA-CCCUc -3'
miRNA:   3'- aCGGGGGua---GAAGGACuuGUUaGGGG- -5'
17620 5' -53.7 NC_004466.2 + 16882 0.67 0.682591
Target:  5'- gUGCCCUCAUagguucUUUCCUGAGC--UCCa- -3'
miRNA:   3'- -ACGGGGGUA------GAAGGACUUGuuAGGgg -5'
17620 5' -53.7 NC_004466.2 + 38803 0.67 0.660102
Target:  5'- gGCCCU--UCUUCCaGAGCAAcaagcugcuUCCUCa -3'
miRNA:   3'- aCGGGGguAGAAGGaCUUGUU---------AGGGG- -5'
17620 5' -53.7 NC_004466.2 + 32442 0.67 0.660102
Target:  5'- cUGCgCCCA-CUgCCUGGGCAuGUCCUUg -3'
miRNA:   3'- -ACGgGGGUaGAaGGACUUGU-UAGGGG- -5'
17620 5' -53.7 NC_004466.2 + 40831 0.68 0.62619
Target:  5'- gGCCCUCAuggUCUUcucCCUGAACAacgagcaacggGUCgCCg -3'
miRNA:   3'- aCGGGGGU---AGAA---GGACUUGU-----------UAGgGG- -5'
17620 5' -53.7 NC_004466.2 + 26089 0.68 0.592327
Target:  5'- -uUCCCCAgCUUCCUuGACAcaaGUCUCCa -3'
miRNA:   3'- acGGGGGUaGAAGGAcUUGU---UAGGGG- -5'
17620 5' -53.7 NC_004466.2 + 42491 0.69 0.579976
Target:  5'- uUGCagCCCCGUCcucgUCCUGGcggauguACAGacgCCCCg -3'
miRNA:   3'- -ACG--GGGGUAGa---AGGACU-------UGUUa--GGGG- -5'
17620 5' -53.7 NC_004466.2 + 36477 0.72 0.393614
Target:  5'- aUGUCCUCcggAUCUUCCU--GCAAUCCCg -3'
miRNA:   3'- -ACGGGGG---UAGAAGGAcuUGUUAGGGg -5'
17620 5' -53.7 NC_004466.2 + 10885 0.72 0.384358
Target:  5'- gGCCCCUAUCU---UGGAUAuguUCCCCu -3'
miRNA:   3'- aCGGGGGUAGAaggACUUGUu--AGGGG- -5'
17620 5' -53.7 NC_004466.2 + 33025 1.13 0.000559
Target:  5'- uUGCCCCCAUCUUCCUGAACAAUCCCCa -3'
miRNA:   3'- -ACGGGGGUAGAAGGACUUGUUAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.