miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17626 5' -53.9 NC_004466.2 + 25545 0.66 0.760659
Target:  5'- gGGGuGAUGGuGAGGAUGauCCGCUGuuCg -3'
miRNA:   3'- -CCCuUUACC-CUCCUAUc-GGUGACcgG- -5'
17626 5' -53.9 NC_004466.2 + 26126 0.66 0.760659
Target:  5'- cGGAGAgucgcaaGGuccucGGGAUGGCacuccCACUGGCCu -3'
miRNA:   3'- cCCUUUac-----CC-----UCCUAUCG-----GUGACCGG- -5'
17626 5' -53.9 NC_004466.2 + 44130 0.66 0.757511
Target:  5'- aGGAAAUGGGuaucuaaccccaacuGAUgaGGCCAaggugauucCUGGCCg -3'
miRNA:   3'- cCCUUUACCCuc-------------CUA--UCGGU---------GACCGG- -5'
17626 5' -53.9 NC_004466.2 + 14158 0.66 0.750121
Target:  5'- aGGGcucUGGGGGcGGUGGUgG-UGGCCu -3'
miRNA:   3'- -CCCuuuACCCUC-CUAUCGgUgACCGG- -5'
17626 5' -53.9 NC_004466.2 + 37339 0.66 0.750121
Target:  5'- -aGAGGUGGGAGGAcAGgUugUcgaugacuuccaGGCCg -3'
miRNA:   3'- ccCUUUACCCUCCUaUCgGugA------------CCGG- -5'
17626 5' -53.9 NC_004466.2 + 40656 0.66 0.72868
Target:  5'- cGGAugauGUGGacucgcacGAGGGUAucgugguugucGCUGCUGGCCc -3'
miRNA:   3'- cCCUu---UACC--------CUCCUAU-----------CGGUGACCGG- -5'
17626 5' -53.9 NC_004466.2 + 39186 0.67 0.684686
Target:  5'- -----uUGGGAGGAagaGGCCcaccuggaGCUGGCUg -3'
miRNA:   3'- cccuuuACCCUCCUa--UCGG--------UGACCGG- -5'
17626 5' -53.9 NC_004466.2 + 32564 0.68 0.616215
Target:  5'- cGGcGGAGcuuaaccUGGGAcaGGAUAGCC-C-GGCCa -3'
miRNA:   3'- -CC-CUUU-------ACCCU--CCUAUCGGuGaCCGG- -5'
17626 5' -53.9 NC_004466.2 + 30412 0.68 0.593766
Target:  5'- uGGGAcGUGGaGgcauucaAGGAU-GCUGCUGGUCa -3'
miRNA:   3'- -CCCUuUACC-C-------UCCUAuCGGUGACCGG- -5'
17626 5' -53.9 NC_004466.2 + 16121 0.69 0.539482
Target:  5'- -cGAAGcuucUGGGA-GAUAGCCgACUGGUCu -3'
miRNA:   3'- ccCUUU----ACCCUcCUAUCGG-UGACCGG- -5'
17626 5' -53.9 NC_004466.2 + 615 0.72 0.375558
Target:  5'- cGGGGGAUGGuGGccuagguagaacguGGUGGCCAUUaGGCCa -3'
miRNA:   3'- -CCCUUUACCcUC--------------CUAUCGGUGA-CCGG- -5'
17626 5' -53.9 NC_004466.2 + 38826 1.13 0.00055
Target:  5'- gGGGAAAUGGGAGGAUAGCCACUGGCCc -3'
miRNA:   3'- -CCCUUUACCCUCCUAUCGGUGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.