miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17630 5' -55.6 NC_004466.2 + 29323 0.66 0.614926
Target:  5'- --gCGGUgaaaCGGGCguuGGCUCUaagucaggagaugcUCAGCGGCa -3'
miRNA:   3'- auaGUCG----GUUCG---CCGAGA--------------AGUCGCCG- -5'
17630 5' -55.6 NC_004466.2 + 37920 0.66 0.594561
Target:  5'- -cUCGGgaaaccuUCAAGCGuCUCUaCAGCGGCc -3'
miRNA:   3'- auAGUC-------GGUUCGCcGAGAaGUCGCCG- -5'
17630 5' -55.6 NC_004466.2 + 9663 0.66 0.584416
Target:  5'- --cCAGUCGAGa-GCUagcgaagUCAGCGGCa -3'
miRNA:   3'- auaGUCGGUUCgcCGAga-----AGUCGCCG- -5'
17630 5' -55.6 NC_004466.2 + 30382 0.67 0.550883
Target:  5'- gGUCAGCUccgGGGCaaGCUCUUCAuGUGGa -3'
miRNA:   3'- aUAGUCGG---UUCGc-CGAGAAGU-CGCCg -5'
17630 5' -55.6 NC_004466.2 + 8853 0.67 0.528855
Target:  5'- --aCAcCCGAGUGGCgcUCUUCGGCGuuaGCg -3'
miRNA:   3'- auaGUcGGUUCGCCG--AGAAGUCGC---CG- -5'
17630 5' -55.6 NC_004466.2 + 37598 0.67 0.496455
Target:  5'- cAUCuGCCAu-CGGCUUcgUCGGUGGUa -3'
miRNA:   3'- aUAGuCGGUucGCCGAGa-AGUCGCCG- -5'
17630 5' -55.6 NC_004466.2 + 41659 0.68 0.46498
Target:  5'- aGUCgAGCCGAuCGGCUUacCuGCGGCa -3'
miRNA:   3'- aUAG-UCGGUUcGCCGAGaaGuCGCCG- -5'
17630 5' -55.6 NC_004466.2 + 2456 0.69 0.405355
Target:  5'- -uUUAGCCAAGUcuGGCUCUUCGuCGaGUa -3'
miRNA:   3'- auAGUCGGUUCG--CCGAGAAGUcGC-CG- -5'
17630 5' -55.6 NC_004466.2 + 28817 0.69 0.405355
Target:  5'- --gCAGCUcuagAGGCaGC-CUUCAGCGGUg -3'
miRNA:   3'- auaGUCGG----UUCGcCGaGAAGUCGCCG- -5'
17630 5' -55.6 NC_004466.2 + 14150 0.69 0.405355
Target:  5'- cGUCA-CCAAG-GGCUCUgggggCGGUGGUg -3'
miRNA:   3'- aUAGUcGGUUCgCCGAGAa----GUCGCCG- -5'
17630 5' -55.6 NC_004466.2 + 16460 0.71 0.332949
Target:  5'- -cUCAGCCAguuccgcagcaauAGCGGCUUucauUUCAGgGGa -3'
miRNA:   3'- auAGUCGGU-------------UCGCCGAG----AAGUCgCCg -5'
17630 5' -55.6 NC_004466.2 + 41311 1.09 0.000536
Target:  5'- aUAUCAGCCAAGCGGCUCUUCAGCGGCc -3'
miRNA:   3'- -AUAGUCGGUUCGCCGAGAAGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.