miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17652 3' -56.2 NC_004466.2 + 40722 0.67 0.62112
Target:  5'- cCCaGGCGGCUgaggauGCGGUcGG-CG-ACCCg -3'
miRNA:   3'- -GGaCUGCCGG------UGCCAuCCaGCuUGGG- -5'
17652 3' -56.2 NC_004466.2 + 41580 0.68 0.514234
Target:  5'- cCCUGGCGuGCCGCaGGUAagccgaucGGcUCGAcUCCa -3'
miRNA:   3'- -GGACUGC-CGGUG-CCAU--------CC-AGCUuGGG- -5'
17652 3' -56.2 NC_004466.2 + 1753 0.7 0.43441
Target:  5'- gCCauaAUGGCUgggACGGUAGGgcUCGAACCUa -3'
miRNA:   3'- -GGac-UGCCGG---UGCCAUCC--AGCUUGGG- -5'
17652 3' -56.2 NC_004466.2 + 41680 0.7 0.415589
Target:  5'- cCCUGGCaGCCguaGGUguGGaGUCGAGCCg -3'
miRNA:   3'- -GGACUGcCGGug-CCA--UC-CAGCUUGGg -5'
17652 3' -56.2 NC_004466.2 + 39109 0.71 0.3708
Target:  5'- aCCUGAUGGCCAa--UGGGUauacCGAgcACCCa -3'
miRNA:   3'- -GGACUGCCGGUgccAUCCA----GCU--UGGG- -5'
17652 3' -56.2 NC_004466.2 + 12362 0.71 0.35383
Target:  5'- gCUGAUGGCUAuUGGgGGGUCuccaugGAGCCCc -3'
miRNA:   3'- gGACUGCCGGU-GCCaUCCAG------CUUGGG- -5'
17652 3' -56.2 NC_004466.2 + 9173 0.72 0.345553
Target:  5'- cCCUGAUGGCCuuUGGUggAGGcaUCGAGauCCCu -3'
miRNA:   3'- -GGACUGCCGGu-GCCA--UCC--AGCUU--GGG- -5'
17652 3' -56.2 NC_004466.2 + 41660 0.72 0.345553
Target:  5'- uCCUGGgGGCCuuccugACGGgucauGUUGAACCCa -3'
miRNA:   3'- -GGACUgCCGG------UGCCauc--CAGCUUGGG- -5'
17652 3' -56.2 NC_004466.2 + 36190 0.72 0.32942
Target:  5'- -aUGAgUGGCCACGGaucgaUGGGUgGAACCg -3'
miRNA:   3'- ggACU-GCCGGUGCC-----AUCCAgCUUGGg -5'
17652 3' -56.2 NC_004466.2 + 42362 0.76 0.183223
Target:  5'- cCUUGAUGGUCACGG--GGUaGAACCCg -3'
miRNA:   3'- -GGACUGCCGGUGCCauCCAgCUUGGG- -5'
17652 3' -56.2 NC_004466.2 + 33037 1.13 0.000406
Target:  5'- cCCUGACGGCCACGGUAGGUCGAACCCu -3'
miRNA:   3'- -GGACUGCCGGUGCCAUCCAGCUUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.