miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17658 5' -51 NC_004466.2 + 14281 0.66 0.825508
Target:  5'- uUGGGGGUcuGUUGuuCUAAUGgCCUCUUu -3'
miRNA:   3'- gAUCCCCG--UAAU--GAUUGCgGGAGAAu -5'
17658 5' -51 NC_004466.2 + 32172 0.67 0.795457
Target:  5'- -gAGGuGGCAUgcccgACgaaucgGGCGCCCUCc-- -3'
miRNA:   3'- gaUCC-CCGUAa----UGa-----UUGCGGGAGaau -5'
17658 5' -51 NC_004466.2 + 14163 0.67 0.795457
Target:  5'- uCUGGGGGCggUGgUggUGgCCUCg-- -3'
miRNA:   3'- -GAUCCCCGuaAUgAuuGCgGGAGaau -5'
17658 5' -51 NC_004466.2 + 44605 0.67 0.785038
Target:  5'- -cAGGGGUGUgUACUAugacGCGCCC-CUg- -3'
miRNA:   3'- gaUCCCCGUA-AUGAU----UGCGGGaGAau -5'
17658 5' -51 NC_004466.2 + 32971 0.68 0.763674
Target:  5'- aUGGGGGCAagGCgacggaGACGUucagCCUCUUGg -3'
miRNA:   3'- gAUCCCCGUaaUGa-----UUGCG----GGAGAAU- -5'
17658 5' -51 NC_004466.2 + 39673 0.69 0.661569
Target:  5'- -aAGaGGGCGUUAgUAAUGCCC-CUa- -3'
miRNA:   3'- gaUC-CCCGUAAUgAUUGCGGGaGAau -5'
17658 5' -51 NC_004466.2 + 39642 0.7 0.614802
Target:  5'- cCUGGGGGUAUUGCUGGCuaaCUCa-- -3'
miRNA:   3'- -GAUCCCCGUAAUGAUUGcggGAGaau -5'
17658 5' -51 NC_004466.2 + 33251 0.71 0.545359
Target:  5'- -cAGGGGCuAUUACUAACGCacuaCCUUa-- -3'
miRNA:   3'- gaUCCCCG-UAAUGAUUGCG----GGAGaau -5'
17658 5' -51 NC_004466.2 + 15188 0.74 0.416166
Target:  5'- cCUGGGGGCcuc-CUGugGCCUUCUg- -3'
miRNA:   3'- -GAUCCCCGuaauGAUugCGGGAGAau -5'
17658 5' -51 NC_004466.2 + 7424 0.77 0.26902
Target:  5'- --cGGGGUAUUGCUGAUGCCCg---- -3'
miRNA:   3'- gauCCCCGUAAUGAUUGCGGGagaau -5'
17658 5' -51 NC_004466.2 + 39604 1.08 0.002122
Target:  5'- cCUAGGGGCAUUACUAACGCCCUCUUAg -3'
miRNA:   3'- -GAUCCCCGUAAUGAUUGCGGGAGAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.