Results 1 - 14 of 14 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 1390 | 0.67 | 0.620242 |
Target: 5'- aUGCUUGcgGCgaaCCUUGGUGGUCugGUg -3' miRNA: 3'- cAUGAGCuaCG---GGAGUCGCUAGugCA- -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 1688 | 0.66 | 0.666156 |
Target: 5'- -gGCUCGuugaguUGCCCUgCcuCGAUCAUGUg -3' miRNA: 3'- caUGAGCu-----ACGGGA-GucGCUAGUGCA- -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 5027 | 1.07 | 0.001101 |
Target: 5'- cGUACUCGAUGCCCUCAGCGAUCACGUc -3' miRNA: 3'- -CAUGAGCUACGGGAGUCGCUAGUGCA- -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 10061 | 0.67 | 0.585883 |
Target: 5'- -aACUCGAUGCagUCGGCG-UUGCGg -3' miRNA: 3'- caUGAGCUACGggAGUCGCuAGUGCa -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 12000 | 0.75 | 0.21725 |
Target: 5'- -gACUUGAUGCCCUCAaUGAUCGgGUc -3' miRNA: 3'- caUGAGCUACGGGAGUcGCUAGUgCA- -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 13144 | 0.68 | 0.551902 |
Target: 5'- cUGCUCGGUGCCaccuuUCGGCuGAUacCACGa -3' miRNA: 3'- cAUGAGCUACGGg----AGUCG-CUA--GUGCa -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 13317 | 0.68 | 0.539586 |
Target: 5'- -aACUCGAccgggguguauggUGCCC-CAGCGAaggucUCGCGc -3' miRNA: 3'- caUGAGCU-------------ACGGGaGUCGCU-----AGUGCa -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 16403 | 0.67 | 0.585883 |
Target: 5'- -cGCUCgGGUGCCUUCAGgGaAUCAgGa -3' miRNA: 3'- caUGAG-CUACGGGAGUCgC-UAGUgCa -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 22724 | 0.66 | 0.688951 |
Target: 5'- -cAgUCGAacUGCCCgUCAGCGGcccUCACa- -3' miRNA: 3'- caUgAGCU--ACGGG-AGUCGCU---AGUGca -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 23242 | 0.67 | 0.597307 |
Target: 5'- -aGCUCGGaacgUGCgcagagacauCCUCAGCGGacuUCACGUc -3' miRNA: 3'- caUGAGCU----ACG----------GGAGUCGCU---AGUGCA- -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 31835 | 0.68 | 0.518541 |
Target: 5'- gGUACUCGGUGUUCaggaUCAGC--UCACGUc -3' miRNA: 3'- -CAUGAGCUACGGG----AGUCGcuAGUGCA- -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 33835 | 0.68 | 0.551902 |
Target: 5'- -aGCUUGcagGUCCUCAaCGGUCACGUc -3' miRNA: 3'- caUGAGCua-CGGGAGUcGCUAGUGCA- -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 34406 | 0.66 | 0.670729 |
Target: 5'- cUGCU-GGUGCCCUCGGUcuggccuacacaaagGGUCACu- -3' miRNA: 3'- cAUGAgCUACGGGAGUCG---------------CUAGUGca -5' |
|||||||
17970 | 5' | -53.8 | NC_004665.1 | + | 36346 | 0.66 | 0.643221 |
Target: 5'- cGU-CUCGAUGCCCUCgccauuGGCGuUCAg-- -3' miRNA: 3'- -CAuGAGCUACGGGAG------UCGCuAGUgca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home