miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17990 5' -59 NC_004665.1 + 31440 1.07 0.00036
Target:  5'- aACCGAGGAUACCGGCACCCGGAACCUg -3'
miRNA:   3'- -UGGCUCCUAUGGCCGUGGGCCUUGGA- -5'
17990 5' -59 NC_004665.1 + 19776 0.69 0.261932
Target:  5'- cGCUGGGGAUGCUGGggcaCGCuuGGuGACCg -3'
miRNA:   3'- -UGGCUCCUAUGGCC----GUGggCC-UUGGa -5'
17990 5' -59 NC_004665.1 + 4898 0.69 0.268713
Target:  5'- cGCCGgaAGGAUgaGCCGGUGCCaauGAACCg -3'
miRNA:   3'- -UGGC--UCCUA--UGGCCGUGGgc-CUUGGa -5'
17990 5' -59 NC_004665.1 + 7025 0.69 0.275636
Target:  5'- cGCUGAGGAUGCUGGCguGCCCacugaGGucguCCa -3'
miRNA:   3'- -UGGCUCCUAUGGCCG--UGGG-----CCuu--GGa -5'
17990 5' -59 NC_004665.1 + 2828 0.69 0.2827
Target:  5'- cACCGAGGAUuccaCGGUACUCGacACCa -3'
miRNA:   3'- -UGGCUCCUAug--GCCGUGGGCcuUGGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.