miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18010 5' -55.9 NC_004665.1 + 28674 0.66 0.545266
Target:  5'- -cGCCAcgGCgaagcuGGuCUGCCUaaccgugacguuGAGCUGCCu -3'
miRNA:   3'- gaCGGUaaCG------CC-GAUGGG------------UUCGACGG- -5'
18010 5' -55.9 NC_004665.1 + 33226 0.66 0.534174
Target:  5'- -gGCCAgcgUUGUGGa-ACCCGAguGCUGCa -3'
miRNA:   3'- gaCGGU---AACGCCgaUGGGUU--CGACGg -5'
18010 5' -55.9 NC_004665.1 + 28536 0.66 0.523164
Target:  5'- -gGCCAcuaUGCGGCUGCUgcugUAGGUggUGCUg -3'
miRNA:   3'- gaCGGUa--ACGCCGAUGG----GUUCG--ACGG- -5'
18010 5' -55.9 NC_004665.1 + 13499 0.66 0.501414
Target:  5'- aUGCCGaUGC-GCUucuggaucaGCUCAauGGCUGCCu -3'
miRNA:   3'- gACGGUaACGcCGA---------UGGGU--UCGACGG- -5'
18010 5' -55.9 NC_004665.1 + 28342 0.67 0.490689
Target:  5'- uUGCCucUGgGaGCUugUCAcGGCUGCCc -3'
miRNA:   3'- gACGGuaACgC-CGAugGGU-UCGACGG- -5'
18010 5' -55.9 NC_004665.1 + 18909 0.67 0.469568
Target:  5'- uUGCCucgggacUUGCGGUaGCCUGAGCaGCg -3'
miRNA:   3'- gACGGu------AACGCCGaUGGGUUCGaCGg -5'
18010 5' -55.9 NC_004665.1 + 2275 0.67 0.46644
Target:  5'- -aGaCCcUUGCGGCguccuuucgguacacCCCAgcGGCUGCCu -3'
miRNA:   3'- gaC-GGuAACGCCGau-------------GGGU--UCGACGG- -5'
18010 5' -55.9 NC_004665.1 + 26673 0.67 0.459182
Target:  5'- gUGCCuaUGCGGCUgACCCA-GC-GaCCa -3'
miRNA:   3'- gACGGuaACGCCGA-UGGGUuCGaC-GG- -5'
18010 5' -55.9 NC_004665.1 + 18343 0.68 0.399607
Target:  5'- aUGCCAUUGaGGCacGCCUGAGCUacGUCu -3'
miRNA:   3'- gACGGUAACgCCGa-UGGGUUCGA--CGG- -5'
18010 5' -55.9 NC_004665.1 + 22086 0.68 0.390166
Target:  5'- cCUGaCCcaUGCGGcCUACCCAcGGCUGg- -3'
miRNA:   3'- -GAC-GGuaACGCC-GAUGGGU-UCGACgg -5'
18010 5' -55.9 NC_004665.1 + 28925 0.69 0.353894
Target:  5'- -aGCCcgUGaGGCUGCUcgCAAGCUGgCg -3'
miRNA:   3'- gaCGGuaACgCCGAUGG--GUUCGACgG- -5'
18010 5' -55.9 NC_004665.1 + 7703 0.71 0.281277
Target:  5'- cCUGCCAUcGCuGGCgguUCCAAGCUGa- -3'
miRNA:   3'- -GACGGUAaCG-CCGau-GGGUUCGACgg -5'
18010 5' -55.9 NC_004665.1 + 28449 0.71 0.259845
Target:  5'- gCUGCCcgUGUGG--GCaagCAGGCUGCCu -3'
miRNA:   3'- -GACGGuaACGCCgaUGg--GUUCGACGG- -5'
18010 5' -55.9 NC_004665.1 + 36252 0.72 0.233365
Target:  5'- aUGaCCAgcUUGUGGCUGCCCAguacaGGCU-CCa -3'
miRNA:   3'- gAC-GGU--AACGCCGAUGGGU-----UCGAcGG- -5'
18010 5' -55.9 NC_004665.1 + 15355 0.72 0.233365
Target:  5'- -aGCCAgu-CGGCUACCCGcacuuCUGCCa -3'
miRNA:   3'- gaCGGUaacGCCGAUGGGUuc---GACGG- -5'
18010 5' -55.9 NC_004665.1 + 32152 0.73 0.209191
Target:  5'- gCUGCCAgUGCGaGUcaauccGCCCAGucuGCUGCCa -3'
miRNA:   3'- -GACGGUaACGC-CGa-----UGGGUU---CGACGG- -5'
18010 5' -55.9 NC_004665.1 + 11648 1.11 0.000278
Target:  5'- gCUGCCAUUGCGGCUACCCAAGCUGCCu -3'
miRNA:   3'- -GACGGUAACGCCGAUGGGUUCGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.