Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18021 | 5' | -51.5 | NC_004665.1 | + | 23010 | 1.09 | 0.001297 |
Target: 5'- cUGUCGAGCAAGACCAUCGAGCUUGACc -3' miRNA: 3'- -ACAGCUCGUUCUGGUAGCUCGAACUG- -5' |
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18021 | 5' | -51.5 | NC_004665.1 | + | 23840 | 0.74 | 0.322251 |
Target: 5'- gGUCGAGguGGAcCCAUCGucagcggucuGCUUGAUg -3' miRNA: 3'- aCAGCUCguUCU-GGUAGCu---------CGAACUG- -5' |
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18021 | 5' | -51.5 | NC_004665.1 | + | 34741 | 0.72 | 0.455353 |
Target: 5'- -aUCGAGCAAGcCCAgCGAGCa-GACg -3' miRNA: 3'- acAGCUCGUUCuGGUaGCUCGaaCUG- -5' |
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18021 | 5' | -51.5 | NC_004665.1 | + | 22992 | 0.69 | 0.589574 |
Target: 5'- cUGUCGAGCAAGACCAUCn-------- -3' miRNA: 3'- -ACAGCUCGUUCUGGUAGcucgaacug -5' |
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18021 | 5' | -51.5 | NC_004665.1 | + | 36870 | 0.69 | 0.624643 |
Target: 5'- gUGaCGAGCAgaAGGCCGaUGAGCUUGu- -3' miRNA: 3'- -ACaGCUCGU--UCUGGUaGCUCGAACug -5' |
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18021 | 5' | -51.5 | NC_004665.1 | + | 11121 | 0.68 | 0.659776 |
Target: 5'- --aCGAGCGuaAGACCAUCGAccGaCUgaUGACa -3' miRNA: 3'- acaGCUCGU--UCUGGUAGCU--C-GA--ACUG- -5' |
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18021 | 5' | -51.5 | NC_004665.1 | + | 16619 | 0.68 | 0.692336 |
Target: 5'- cGUCuGAGgGAGAUCAUUGAGCaguucccugagaUGACa -3' miRNA: 3'- aCAG-CUCgUUCUGGUAGCUCGa-----------ACUG- -5' |
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18021 | 5' | -51.5 | NC_004665.1 | + | 12028 | 0.68 | 0.671445 |
Target: 5'- gGUCGcuGCGaccugcucggAGACCAUCGA-CUUGAUg -3' miRNA: 3'- aCAGCu-CGU----------UCUGGUAGCUcGAACUG- -5' |
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18021 | 5' | -51.5 | NC_004665.1 | + | 2721 | 0.67 | 0.728897 |
Target: 5'- --cCGAGCAAGaACCGUCGAaggcaaucgGCagGGCg -3' miRNA: 3'- acaGCUCGUUC-UGGUAGCU---------CGaaCUG- -5' |
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18021 | 5' | -51.5 | NC_004665.1 | + | 19146 | 0.67 | 0.751206 |
Target: 5'- aGUCGAGCuGGGCac-CGAGCagGAUc -3' miRNA: 3'- aCAGCUCGuUCUGguaGCUCGaaCUG- -5' |
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18021 | 5' | -51.5 | NC_004665.1 | + | 18253 | 0.66 | 0.78255 |
Target: 5'- cGUUGGGguucaCAAGGCCGacgaccuUCGAGCUaaucaUGGCg -3' miRNA: 3'- aCAGCUC-----GUUCUGGU-------AGCUCGA-----ACUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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