miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18030 3' -52.9 NC_004665.1 + 6083 0.66 0.704245
Target:  5'- gGGCAAagacACCCUCGUugAGCU-UCUCCGu- -3'
miRNA:   3'- -UUGUU----UGGGAGCG--UCGGuAGAGGUuc -5'
18030 3' -52.9 NC_004665.1 + 24921 0.66 0.69272
Target:  5'- aAGCGAGCCa--GCAGCgCAUgUCCAu- -3'
miRNA:   3'- -UUGUUUGGgagCGUCG-GUAgAGGUuc -5'
18030 3' -52.9 NC_004665.1 + 12532 0.66 0.679967
Target:  5'- gAugAGACCauccggcUUCGCAGCCucagCUUCGAGg -3'
miRNA:   3'- -UugUUUGG-------GAGCGUCGGua--GAGGUUC- -5'
18030 3' -52.9 NC_004665.1 + 21105 0.66 0.669485
Target:  5'- aAACAGAUgacgaaCUCGCAGCCAUCaaCGAc -3'
miRNA:   3'- -UUGUUUGg-----GAGCGUCGGUAGagGUUc -5'
18030 3' -52.9 NC_004665.1 + 30565 0.67 0.646091
Target:  5'- gAACuGGCCgCUCGCAGuCCGUUcaCCAAGc -3'
miRNA:   3'- -UUGuUUGG-GAGCGUC-GGUAGa-GGUUC- -5'
18030 3' -52.9 NC_004665.1 + 33506 0.67 0.634365
Target:  5'- cAACAGGCCCuUCGgGGCCuUCUUUAu- -3'
miRNA:   3'- -UUGUUUGGG-AGCgUCGGuAGAGGUuc -5'
18030 3' -52.9 NC_004665.1 + 36549 0.69 0.518791
Target:  5'- cGACAcACCUUCGCuGaucgaCAUCUCCAGc -3'
miRNA:   3'- -UUGUuUGGGAGCGuCg----GUAGAGGUUc -5'
18030 3' -52.9 NC_004665.1 + 36478 0.72 0.346494
Target:  5'- cAAgGAACUCUUGCAG-CAUCUCCGAc -3'
miRNA:   3'- -UUgUUUGGGAGCGUCgGUAGAGGUUc -5'
18030 3' -52.9 NC_004665.1 + 9208 0.72 0.337711
Target:  5'- -cCAGAcCCCUUGCAGCCGa-UCCGAGu -3'
miRNA:   3'- uuGUUU-GGGAGCGUCGGUagAGGUUC- -5'
18030 3' -52.9 NC_004665.1 + 2879 0.76 0.190186
Target:  5'- cGugGAAUCCUCGguGCCGUaCUUCAAGu -3'
miRNA:   3'- -UugUUUGGGAGCguCGGUA-GAGGUUC- -5'
18030 3' -52.9 NC_004665.1 + 34531 1.07 0.00106
Target:  5'- cAACAAACCCUCGCAGCCAUCUCCAAGg -3'
miRNA:   3'- -UUGUUUGGGAGCGUCGGUAGAGGUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.