miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18046 5' -62.5 NC_004680.1 + 574 1.07 0.000352
Target:  5'- cACCGGCGCAGCCUCCGACUUCCGCCGc -3'
miRNA:   3'- -UGGCCGCGUCGGAGGCUGAAGGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 17085 0.73 0.119857
Target:  5'- cCCGGCGCAGCCgUUCGAUUggCgGCCc -3'
miRNA:   3'- uGGCCGCGUCGG-AGGCUGAa-GgCGGc -5'
18046 5' -62.5 NC_004680.1 + 52265 0.71 0.186715
Target:  5'- uGCCGGCGCAGCuCUgCGGCgagggcUUCGCg- -3'
miRNA:   3'- -UGGCCGCGUCG-GAgGCUGa-----AGGCGgc -5'
18046 5' -62.5 NC_004680.1 + 11226 0.7 0.206639
Target:  5'- cACCGGUGUuGCCguaugacaCGACguugCCGCCGg -3'
miRNA:   3'- -UGGCCGCGuCGGag------GCUGaa--GGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 43652 0.7 0.222766
Target:  5'- aGCCGGCGCAGCCgCCcuuGAUga-CGCgCGg -3'
miRNA:   3'- -UGGCCGCGUCGGaGG---CUGaagGCG-GC- -5'
18046 5' -62.5 NC_004680.1 + 27969 0.69 0.233525
Target:  5'- gUCGuaGCAGCCUUCGaugccgaGCUUCgCGCCGa -3'
miRNA:   3'- uGGCcgCGUCGGAGGC-------UGAAG-GCGGC- -5'
18046 5' -62.5 NC_004680.1 + 16516 0.69 0.234103
Target:  5'- cGCCaaCGgGGCCUCCGACUUaCgGCCa -3'
miRNA:   3'- -UGGccGCgUCGGAGGCUGAA-GgCGGc -5'
18046 5' -62.5 NC_004680.1 + 12160 0.69 0.237012
Target:  5'- uCCGGCGCuGCCgcccagguauccguUCCGACgguggcgguagCCGCCc -3'
miRNA:   3'- uGGCCGCGuCGG--------------AGGCUGaa---------GGCGGc -5'
18046 5' -62.5 NC_004680.1 + 48293 0.69 0.245921
Target:  5'- cGCCGGCG-AGCCaaCCGAacCUUCCacuuGCCGg -3'
miRNA:   3'- -UGGCCGCgUCGGa-GGCU--GAAGG----CGGC- -5'
18046 5' -62.5 NC_004680.1 + 9668 0.69 0.258229
Target:  5'- cGCCGaucGCGCGGCCagcagCCGAa--CCGCCa -3'
miRNA:   3'- -UGGC---CGCGUCGGa----GGCUgaaGGCGGc -5'
18046 5' -62.5 NC_004680.1 + 8135 0.68 0.26393
Target:  5'- uACCGGCGUuGUCacacaaaggaaguUCCGACU-CCaGCCGg -3'
miRNA:   3'- -UGGCCGCGuCGG-------------AGGCUGAaGG-CGGC- -5'
18046 5' -62.5 NC_004680.1 + 37909 0.68 0.28435
Target:  5'- uACCGGCGUGcGCC-UgGACUgUCGCCGa -3'
miRNA:   3'- -UGGCCGCGU-CGGaGgCUGAaGGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 37996 0.68 0.291198
Target:  5'- uUCGGCGaCAGUCUCaGGCgcaCGCCGg -3'
miRNA:   3'- uGGCCGC-GUCGGAGgCUGaagGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 3151 0.68 0.291198
Target:  5'- cCCGGCGCGGCCUCaaagaucgaGGCguagUCgaucgcguUGCCGu -3'
miRNA:   3'- uGGCCGCGUCGGAGg--------CUGa---AG--------GCGGC- -5'
18046 5' -62.5 NC_004680.1 + 17372 0.68 0.301002
Target:  5'- cGCCGGUGUAccggccGCCacacgaucaaacccaUCCGACgaacCCGCCGc -3'
miRNA:   3'- -UGGCCGCGU------CGG---------------AGGCUGaa--GGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 21445 0.67 0.312515
Target:  5'- cGCCGGCGCcGCCauacguggCCGACggggcugagcCCGCgCGg -3'
miRNA:   3'- -UGGCCGCGuCGGa-------GGCUGaa--------GGCG-GC- -5'
18046 5' -62.5 NC_004680.1 + 25457 0.67 0.319879
Target:  5'- aACCGGCagaaacGC-GCCg-CGACUaCCGCCGa -3'
miRNA:   3'- -UGGCCG------CGuCGGagGCUGAaGGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 52722 0.67 0.319879
Target:  5'- --aGGCGCAGCCgugacccuuUCCGugaUUCuCGCCGc -3'
miRNA:   3'- uggCCGCGUCGG---------AGGCug-AAG-GCGGC- -5'
18046 5' -62.5 NC_004680.1 + 8793 0.67 0.32436
Target:  5'- uGCCGGCGgAGaCCcgucCCGGCgcggucaaggggCCGCCGu -3'
miRNA:   3'- -UGGCCGCgUC-GGa---GGCUGaa----------GGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 47920 0.67 0.327372
Target:  5'- aACCGcCGCAGCCagCCGGCgcuccaacUCCGCg- -3'
miRNA:   3'- -UGGCcGCGUCGGa-GGCUGa-------AGGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.