miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18046 5' -62.5 NC_004680.1 + 574 1.07 0.000352
Target:  5'- cACCGGCGCAGCCUCCGACUUCCGCCGc -3'
miRNA:   3'- -UGGCCGCGUCGGAGGCUGAAGGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 3151 0.68 0.291198
Target:  5'- cCCGGCGCGGCCUCaaagaucgaGGCguagUCgaucgcguUGCCGu -3'
miRNA:   3'- uGGCCGCGUCGGAGg--------CUGa---AG--------GCGGC- -5'
18046 5' -62.5 NC_004680.1 + 5585 0.67 0.350626
Target:  5'- gACCaGCGCGGacaCUUCCGGCgacgCUGCUGg -3'
miRNA:   3'- -UGGcCGCGUC---GGAGGCUGaa--GGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 8135 0.68 0.26393
Target:  5'- uACCGGCGUuGUCacacaaaggaaguUCCGACU-CCaGCCGg -3'
miRNA:   3'- -UGGCCGCGuCGG-------------AGGCUGAaGG-CGGC- -5'
18046 5' -62.5 NC_004680.1 + 8793 0.67 0.32436
Target:  5'- uGCCGGCGgAGaCCcgucCCGGCgcggucaaggggCCGCCGu -3'
miRNA:   3'- -UGGCCGCgUC-GGa---GGCUGaa----------GGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 9668 0.69 0.258229
Target:  5'- cGCCGaucGCGCGGCCagcagCCGAa--CCGCCa -3'
miRNA:   3'- -UGGC---CGCGUCGGa----GGCUgaaGGCGGc -5'
18046 5' -62.5 NC_004680.1 + 11029 0.66 0.37503
Target:  5'- aGCCGGCccccCGGCC-CCGucgauguCUcCCGCCGu -3'
miRNA:   3'- -UGGCCGc---GUCGGaGGCu------GAaGGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 11079 0.66 0.400557
Target:  5'- uGCCGG-GCGGCCUUggUGGCggCC-CCGg -3'
miRNA:   3'- -UGGCCgCGUCGGAG--GCUGaaGGcGGC- -5'
18046 5' -62.5 NC_004680.1 + 11226 0.7 0.206639
Target:  5'- cACCGGUGUuGCCguaugacaCGACguugCCGCCGg -3'
miRNA:   3'- -UGGCCGCGuCGGag------GCUGaa--GGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 12160 0.69 0.237012
Target:  5'- uCCGGCGCuGCCgcccagguauccguUCCGACgguggcgguagCCGCCc -3'
miRNA:   3'- uGGCCGCGuCGG--------------AGGCUGaa---------GGCGGc -5'
18046 5' -62.5 NC_004680.1 + 12412 0.66 0.383416
Target:  5'- cCCGGCGCGGCaC-CCGAagcggcggUCGCCc -3'
miRNA:   3'- uGGCCGCGUCG-GaGGCUgaa-----GGCGGc -5'
18046 5' -62.5 NC_004680.1 + 12447 0.67 0.342746
Target:  5'- cACCGGUggugGCGGCggcCCGAUggCUGCCGg -3'
miRNA:   3'- -UGGCCG----CGUCGga-GGCUGaaGGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 12540 0.66 0.383416
Target:  5'- cACCGGC--AGCCaUCgGGCcgCCGCCa -3'
miRNA:   3'- -UGGCCGcgUCGG-AGgCUGaaGGCGGc -5'
18046 5' -62.5 NC_004680.1 + 12677 0.67 0.334995
Target:  5'- cGCCGGCcuGCAccGCCauUCCGAgCgcaCCGCCGc -3'
miRNA:   3'- -UGGCCG--CGU--CGG--AGGCU-Gaa-GGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 16516 0.69 0.234103
Target:  5'- cGCCaaCGgGGCCUCCGACUUaCgGCCa -3'
miRNA:   3'- -UGGccGCgUCGGAGGCUGAA-GgCGGc -5'
18046 5' -62.5 NC_004680.1 + 16893 0.67 0.327372
Target:  5'- -aCGGCGguGUgauCUCgGugaacgacGCUUCCGCCGg -3'
miRNA:   3'- ugGCCGCguCG---GAGgC--------UGAAGGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 17085 0.73 0.119857
Target:  5'- cCCGGCGCAGCCgUUCGAUUggCgGCCc -3'
miRNA:   3'- uGGCCGCGUCGG-AGGCUGAa-GgCGGc -5'
18046 5' -62.5 NC_004680.1 + 17283 0.67 0.350626
Target:  5'- cACCGGgGCA-CCgUCCGAUcacguugCCGCCa -3'
miRNA:   3'- -UGGCCgCGUcGG-AGGCUGaa-----GGCGGc -5'
18046 5' -62.5 NC_004680.1 + 17372 0.68 0.301002
Target:  5'- cGCCGGUGUAccggccGCCacacgaucaaacccaUCCGACgaacCCGCCGc -3'
miRNA:   3'- -UGGCCGCGU------CGG---------------AGGCUGaa--GGCGGC- -5'
18046 5' -62.5 NC_004680.1 + 21445 0.67 0.312515
Target:  5'- cGCCGGCGCcGCCauacguggCCGACggggcugagcCCGCgCGg -3'
miRNA:   3'- -UGGCCGCGuCGGa-------GGCUGaa--------GGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.