miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 5' -54.1 NC_004680.1 + 13409 0.66 0.792417
Target:  5'- cGCGGCgagUCCAUuucggggaccgGCCGCGGcauUCCACa- -3'
miRNA:   3'- aCGUCG---AGGUG-----------UGGCGUUu--AGGUGcg -5'
18048 5' -54.1 NC_004680.1 + 14423 0.67 0.708986
Target:  5'- aGCAGCggaccaaacUCCACAUa-CucAUCCGCGCc -3'
miRNA:   3'- aCGUCG---------AGGUGUGgcGuuUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 14602 0.67 0.741175
Target:  5'- cGCGGCgaUCC---CCGCGAAgucgCCugGCg -3'
miRNA:   3'- aCGUCG--AGGuguGGCGUUUa---GGugCG- -5'
18048 5' -54.1 NC_004680.1 + 15211 0.68 0.631713
Target:  5'- gUGUAGaaCgCAUACCGCAAAcCCGCGg -3'
miRNA:   3'- -ACGUCgaG-GUGUGGCGUUUaGGUGCg -5'
18048 5' -54.1 NC_004680.1 + 15268 0.73 0.392415
Target:  5'- cGCAGUUCaGCGgUGCcGGUCCAUGCg -3'
miRNA:   3'- aCGUCGAGgUGUgGCGuUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 18949 0.7 0.554398
Target:  5'- cGguGauccccgCCACGCCGUAgccGAUCCACGa -3'
miRNA:   3'- aCguCga-----GGUGUGGCGU---UUAGGUGCg -5'
18048 5' -54.1 NC_004680.1 + 20241 0.66 0.792417
Target:  5'- uUGCAGaucaccggUCCGCGCgGCAA--UUACGCg -3'
miRNA:   3'- -ACGUCg-------AGGUGUGgCGUUuaGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 20340 0.77 0.214267
Target:  5'- gGCAGCUCCACgaaaauguucACCGCGAucgcguucuUCCAgGCc -3'
miRNA:   3'- aCGUCGAGGUG----------UGGCGUUu--------AGGUgCG- -5'
18048 5' -54.1 NC_004680.1 + 21168 0.74 0.348414
Target:  5'- gUGCAGCgugaaugUCGCACC-CGAGUCC-CGCu -3'
miRNA:   3'- -ACGUCGa------GGUGUGGcGUUUAGGuGCG- -5'
18048 5' -54.1 NC_004680.1 + 21779 0.66 0.751696
Target:  5'- cGgGGCUaucCCAgACUGC---UCCGCGCg -3'
miRNA:   3'- aCgUCGA---GGUgUGGCGuuuAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 22132 0.66 0.762092
Target:  5'- cGCuGUUCCcgACGCCGCG----CGCGCa -3'
miRNA:   3'- aCGuCGAGG--UGUGGCGUuuagGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 22157 0.72 0.439875
Target:  5'- -cCGGCUCgaACGCCGCcGGaCCACGCa -3'
miRNA:   3'- acGUCGAGg-UGUGGCGuUUaGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 22403 0.66 0.762092
Target:  5'- cGCGguaauaccGCUCCGCGCCGgAcauUCCAaccUGCg -3'
miRNA:   3'- aCGU--------CGAGGUGUGGCgUuu-AGGU---GCG- -5'
18048 5' -54.1 NC_004680.1 + 23895 0.69 0.598385
Target:  5'- cGCAGCUUgACgguaaggcgGCCGCGucgCaCACGCa -3'
miRNA:   3'- aCGUCGAGgUG---------UGGCGUuuaG-GUGCG- -5'
18048 5' -54.1 NC_004680.1 + 24200 0.71 0.490437
Target:  5'- gGaCAGUUUCgACGCUGCGAuagCCGCGCu -3'
miRNA:   3'- aC-GUCGAGG-UGUGGCGUUua-GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 24783 0.68 0.642836
Target:  5'- gGCAGCggCgGCACCGCuuucguGUCCGgGa -3'
miRNA:   3'- aCGUCGa-GgUGUGGCGuu----UAGGUgCg -5'
18048 5' -54.1 NC_004680.1 + 24927 0.68 0.663934
Target:  5'- cGCAGCguuguagUCCccgGCGCCucccGCAGAUCCAUugGCg -3'
miRNA:   3'- aCGUCG-------AGG---UGUGG----CGUUUAGGUG--CG- -5'
18048 5' -54.1 NC_004680.1 + 25263 0.7 0.543538
Target:  5'- uUGCAGCcgUCCGCACCuuu--UCCGCuGCg -3'
miRNA:   3'- -ACGUCG--AGGUGUGGcguuuAGGUG-CG- -5'
18048 5' -54.1 NC_004680.1 + 25333 0.68 0.653949
Target:  5'- aGCAGCgcguguaccaacUCCGCGCCGCugguGAcCCGaacCGCu -3'
miRNA:   3'- aCGUCG------------AGGUGUGGCGu---UUaGGU---GCG- -5'
18048 5' -54.1 NC_004680.1 + 25566 0.69 0.576298
Target:  5'- cGCGGUgucugaugUCuUACACCGCAGGUCUAacUGCg -3'
miRNA:   3'- aCGUCG--------AG-GUGUGGCGUUUAGGU--GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.