miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 5' -54.1 NC_004680.1 + 913 1.11 0.000924
Target:  5'- gUGCAGCUCCACACCGCAAAUCCACGCc -3'
miRNA:   3'- -ACGUCGAGGUGUGGCGUUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 1216 0.68 0.642836
Target:  5'- gUGCGGCUCaucgaaAUGCUGaaacgucGUCCGCGCa -3'
miRNA:   3'- -ACGUCGAGg-----UGUGGCguu----UAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 2453 0.7 0.511412
Target:  5'- cGCuGaaacgaacgCCACGCCGCAGAcguguUCCGCGUc -3'
miRNA:   3'- aCGuCga-------GGUGUGGCGUUU-----AGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 3758 0.7 0.518841
Target:  5'- uUGCAG-UCCACugucagacagcguuACCGau-GUCCACGCu -3'
miRNA:   3'- -ACGUCgAGGUG--------------UGGCguuUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 4880 0.66 0.751696
Target:  5'- ---cGUUCCACcgguCgGCGGAUUCGCGCa -3'
miRNA:   3'- acguCGAGGUGu---GgCGUUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 5257 0.66 0.792417
Target:  5'- aGguGCcaCCACGCCaGCGAuguggaCCACGUu -3'
miRNA:   3'- aCguCGa-GGUGUGG-CGUUua----GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 5673 0.71 0.469871
Target:  5'- aGCAGCgu--CGCCGgAAguGUCCGCGCu -3'
miRNA:   3'- aCGUCGagguGUGGCgUU--UAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 5737 0.68 0.687122
Target:  5'- cGCAGaUCgACACCGUuGAggcgCUGCGCg -3'
miRNA:   3'- aCGUCgAGgUGUGGCGuUUa---GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 5771 0.7 0.543538
Target:  5'- gGaCAGCUucUCugACCGU--AUCCGCGCu -3'
miRNA:   3'- aC-GUCGA--GGugUGGCGuuUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 6818 0.67 0.730542
Target:  5'- cGCAGCUCCGCcACC--AAAcCCgGCGCc -3'
miRNA:   3'- aCGUCGAGGUG-UGGcgUUUaGG-UGCG- -5'
18048 5' -54.1 NC_004680.1 + 8223 0.67 0.698087
Target:  5'- aGCAGCagCAacugguacuCCGcCGAAUCCGCGUc -3'
miRNA:   3'- aCGUCGagGUgu-------GGC-GUUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 9008 0.67 0.730542
Target:  5'- aGCAGCacgaccguugaUCUGCuucgACCGCAAcaccucguaguuGUCCAUGCc -3'
miRNA:   3'- aCGUCG-----------AGGUG----UGGCGUU------------UAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 9068 0.67 0.708986
Target:  5'- aGCucGUUCCGCgAUCGUGAagcccugcucgGUCCACGCc -3'
miRNA:   3'- aCGu-CGAGGUG-UGGCGUU-----------UAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 9926 0.66 0.772352
Target:  5'- cGCGGCcagccaCCGCGCCaGCcu-UCgACGCa -3'
miRNA:   3'- aCGUCGa-----GGUGUGG-CGuuuAGgUGCG- -5'
18048 5' -54.1 NC_004680.1 + 10680 0.66 0.766213
Target:  5'- aGCGGCaUCCcggaacgccucuuugAUGCCGuCGccgugggcaacGAUCCACGCg -3'
miRNA:   3'- aCGUCG-AGG---------------UGUGGC-GU-----------UUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 12330 0.66 0.79143
Target:  5'- cGCcGCUucgggugCCGCGCCGgGgAGUCC-CGCg -3'
miRNA:   3'- aCGuCGA-------GGUGUGGCgU-UUAGGuGCG- -5'
18048 5' -54.1 NC_004680.1 + 12375 0.69 0.62059
Target:  5'- cGCGGgUCCACugC-CGGGUCCG-GCu -3'
miRNA:   3'- aCGUCgAGGUGugGcGUUUAGGUgCG- -5'
18048 5' -54.1 NC_004680.1 + 12677 0.67 0.708986
Target:  5'- cGcCGGC-CUGCACCGCcauUCCgaGCGCa -3'
miRNA:   3'- aC-GUCGaGGUGUGGCGuuuAGG--UGCG- -5'
18048 5' -54.1 NC_004680.1 + 12703 0.66 0.751696
Target:  5'- gGCGGC-CagguCGCCGCG-AUCgGCGCc -3'
miRNA:   3'- aCGUCGaGgu--GUGGCGUuUAGgUGCG- -5'
18048 5' -54.1 NC_004680.1 + 12818 0.73 0.374386
Target:  5'- gUGCGGCUcCCGCGuuGCcGAaCCugGCu -3'
miRNA:   3'- -ACGUCGA-GGUGUggCGuUUaGGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.