Results 1 - 20 of 103 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18048 | 5' | -54.1 | NC_004680.1 | + | 913 | 1.11 | 0.000924 |
Target: 5'- gUGCAGCUCCACACCGCAAAUCCACGCc -3' miRNA: 3'- -ACGUCGAGGUGUGGCGUUUAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 53189 | 0.81 | 0.116599 |
Target: 5'- cUGcCAGCUCCACGCCG-AAAUUUACGCc -3' miRNA: 3'- -AC-GUCGAGGUGUGGCgUUUAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 55101 | 0.8 | 0.142045 |
Target: 5'- gGCGGCgagCCauGCGCCGCAuGAUCCugGCc -3' miRNA: 3'- aCGUCGa--GG--UGUGGCGU-UUAGGugCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 33610 | 0.8 | 0.146071 |
Target: 5'- gGCGGCgaUCCGCACCGCAucuGGUUCGuCGCa -3' miRNA: 3'- aCGUCG--AGGUGUGGCGU---UUAGGU-GCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 33488 | 0.78 | 0.177276 |
Target: 5'- cGCAGCacaucaUCCACACCGCGu-UCCAgGUg -3' miRNA: 3'- aCGUCG------AGGUGUGGCGUuuAGGUgCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 20340 | 0.77 | 0.214267 |
Target: 5'- gGCAGCUCCACgaaaauguucACCGCGAucgcguucuUCCAgGCc -3' miRNA: 3'- aCGUCGAGGUG----------UGGCGUUu--------AGGUgCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 31545 | 0.77 | 0.214267 |
Target: 5'- gUGCAGCacaaaaUCCGCACUGguGucgCCACGCu -3' miRNA: 3'- -ACGUCG------AGGUGUGGCguUua-GGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 40088 | 0.77 | 0.225392 |
Target: 5'- gUGaCGGC-CCGCugcgucaGCCGUAGAUCCGCGCc -3' miRNA: 3'- -AC-GUCGaGGUG-------UGGCGUUUAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 40973 | 0.75 | 0.2784 |
Target: 5'- aGUAG-UCCACGCCGCGggcgguGGUCCACuGCu -3' miRNA: 3'- aCGUCgAGGUGUGGCGU------UUAGGUG-CG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 53183 | 0.75 | 0.285593 |
Target: 5'- gGCuGUcCCACGCgGC-GAUCCACGCa -3' miRNA: 3'- aCGuCGaGGUGUGgCGuUUAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 33907 | 0.75 | 0.308048 |
Target: 5'- aUGCAGaaaCUCCGCACCGaCAAucCCACGg -3' miRNA: 3'- -ACGUC---GAGGUGUGGC-GUUuaGGUGCg -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 38310 | 0.74 | 0.315826 |
Target: 5'- uUGUAGC-CgGCACCGCAGGcuggcguuuucUUCACGCa -3' miRNA: 3'- -ACGUCGaGgUGUGGCGUUU-----------AGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 21168 | 0.74 | 0.348414 |
Target: 5'- gUGCAGCgugaaugUCGCACC-CGAGUCC-CGCu -3' miRNA: 3'- -ACGUCGa------GGUGUGGcGUUUAGGuGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 12818 | 0.73 | 0.374386 |
Target: 5'- gUGCGGCUcCCGCGuuGCcGAaCCugGCu -3' miRNA: 3'- -ACGUCGA-GGUGUggCGuUUaGGugCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 32234 | 0.73 | 0.374386 |
Target: 5'- aGCAGC-CUugGCCGCGA--CCACaGCa -3' miRNA: 3'- aCGUCGaGGugUGGCGUUuaGGUG-CG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 58206 | 0.73 | 0.38333 |
Target: 5'- -cCAGCUCCACGCCGCA---CUAacaGCg -3' miRNA: 3'- acGUCGAGGUGUGGCGUuuaGGUg--CG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 39656 | 0.73 | 0.392415 |
Target: 5'- cUGCGgcGCUCCAUGCgGCGc-UCCAUGCa -3' miRNA: 3'- -ACGU--CGAGGUGUGgCGUuuAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 39836 | 0.73 | 0.392415 |
Target: 5'- cUGCGgcGCUCCAUGCgGCGc-UCCAUGCg -3' miRNA: 3'- -ACGU--CGAGGUGUGgCGUuuAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 39788 | 0.73 | 0.392415 |
Target: 5'- cUGCGgcGCUCCAUGCgGCGc-UCCAUGCg -3' miRNA: 3'- -ACGU--CGAGGUGUGgCGUuuAGGUGCG- -5' |
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18048 | 5' | -54.1 | NC_004680.1 | + | 39692 | 0.73 | 0.392415 |
Target: 5'- cUGCGgcGCUCCAUGCgGCGc-UCCAUGCg -3' miRNA: 3'- -ACGU--CGAGGUGUGgCGUuuAGGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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