miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 5' -54.1 NC_004680.1 + 23895 0.69 0.598385
Target:  5'- cGCAGCUUgACgguaaggcgGCCGCGucgCaCACGCa -3'
miRNA:   3'- aCGUCGAGgUG---------UGGCGUuuaG-GUGCG- -5'
18048 5' -54.1 NC_004680.1 + 44241 0.71 0.469871
Target:  5'- gGCAGCgggaaaacCUACACCGCAc--UCGCGCu -3'
miRNA:   3'- aCGUCGa-------GGUGUGGCGUuuaGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 57427 0.71 0.490437
Target:  5'- aGCAGUUCaaccgcaGCGCCGCcuacaaCCGCGCc -3'
miRNA:   3'- aCGUCGAGg------UGUGGCGuuua--GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 58889 0.71 0.500876
Target:  5'- cGCAuucGCgaaaaaCUGCGCCGCAAugCCACGCg -3'
miRNA:   3'- aCGU---CGa-----GGUGUGGCGUUuaGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 25834 0.7 0.522039
Target:  5'- gGCGGCcgCCAcCACgGCGAGaCCACGg -3'
miRNA:   3'- aCGUCGa-GGU-GUGgCGUUUaGGUGCg -5'
18048 5' -54.1 NC_004680.1 + 33333 0.7 0.53275
Target:  5'- cGgGGCcucCCGCACCGCcgagcuGGUCCAUGUc -3'
miRNA:   3'- aCgUCGa--GGUGUGGCGu-----UUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 5771 0.7 0.543538
Target:  5'- gGaCAGCUucUCugACCGU--AUCCGCGCu -3'
miRNA:   3'- aC-GUCGA--GGugUGGCGuuUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 32660 0.7 0.56532
Target:  5'- cGCGGaUCCAC-CCGCcaacacCCACGCu -3'
miRNA:   3'- aCGUCgAGGUGuGGCGuuua--GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 45181 0.69 0.598385
Target:  5'- gGCGGCUCU-CGCCGCGAcgacaCCaACGUg -3'
miRNA:   3'- aCGUCGAGGuGUGGCGUUua---GG-UGCG- -5'
18048 5' -54.1 NC_004680.1 + 41652 0.72 0.449754
Target:  5'- gGCAGaagUCCACACCaGCGAcuggcguucCCGCGCg -3'
miRNA:   3'- aCGUCg--AGGUGUGG-CGUUua-------GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 51654 0.72 0.420494
Target:  5'- gGCGGCUCCGgGa---AGGUCCGCGCa -3'
miRNA:   3'- aCGUCGAGGUgUggcgUUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 43719 0.73 0.401639
Target:  5'- uUGCAGUUCCugGaCCGCGAA---GCGCu -3'
miRNA:   3'- -ACGUCGAGGugU-GGCGUUUaggUGCG- -5'
18048 5' -54.1 NC_004680.1 + 33488 0.78 0.177276
Target:  5'- cGCAGCacaucaUCCACACCGCGu-UCCAgGUg -3'
miRNA:   3'- aCGUCG------AGGUGUGGCGUuuAGGUgCG- -5'
18048 5' -54.1 NC_004680.1 + 20340 0.77 0.214267
Target:  5'- gGCAGCUCCACgaaaauguucACCGCGAucgcguucuUCCAgGCc -3'
miRNA:   3'- aCGUCGAGGUG----------UGGCGUUu--------AGGUgCG- -5'
18048 5' -54.1 NC_004680.1 + 31545 0.77 0.214267
Target:  5'- gUGCAGCacaaaaUCCGCACUGguGucgCCACGCu -3'
miRNA:   3'- -ACGUCG------AGGUGUGGCguUua-GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 33907 0.75 0.308048
Target:  5'- aUGCAGaaaCUCCGCACCGaCAAucCCACGg -3'
miRNA:   3'- -ACGUC---GAGGUGUGGC-GUUuaGGUGCg -5'
18048 5' -54.1 NC_004680.1 + 32234 0.73 0.374386
Target:  5'- aGCAGC-CUugGCCGCGA--CCACaGCa -3'
miRNA:   3'- aCGUCGaGGugUGGCGUUuaGGUG-CG- -5'
18048 5' -54.1 NC_004680.1 + 12818 0.73 0.374386
Target:  5'- gUGCGGCUcCCGCGuuGCcGAaCCugGCu -3'
miRNA:   3'- -ACGUCGA-GGUGUggCGuUUaGGugCG- -5'
18048 5' -54.1 NC_004680.1 + 58206 0.73 0.38333
Target:  5'- -cCAGCUCCACGCCGCA---CUAacaGCg -3'
miRNA:   3'- acGUCGAGGUGUGGCGUuuaGGUg--CG- -5'
18048 5' -54.1 NC_004680.1 + 59081 0.73 0.392415
Target:  5'- aUGCGGCcgCCaagcacaacccaACACCgGCGAAcUCCACGCc -3'
miRNA:   3'- -ACGUCGa-GG------------UGUGG-CGUUU-AGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.