miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 5' -54.1 NC_004680.1 + 5257 0.66 0.792417
Target:  5'- aGguGCcaCCACGCCaGCGAuguggaCCACGUu -3'
miRNA:   3'- aCguCGa-GGUGUGG-CGUUua----GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 9008 0.67 0.730542
Target:  5'- aGCAGCacgaccguugaUCUGCuucgACCGCAAcaccucguaguuGUCCAUGCc -3'
miRNA:   3'- aCGUCG-----------AGGUG----UGGCGUU------------UAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 9068 0.67 0.708986
Target:  5'- aGCucGUUCCGCgAUCGUGAagcccugcucgGUCCACGCc -3'
miRNA:   3'- aCGu-CGAGGUG-UGGCGUU-----------UAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 913 1.11 0.000924
Target:  5'- gUGCAGCUCCACACCGCAAAUCCACGCc -3'
miRNA:   3'- -ACGUCGAGGUGUGGCGUUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 32209 0.66 0.782464
Target:  5'- cUGCAGCUaCugACCGCuacgaagCUgaACGCg -3'
miRNA:   3'- -ACGUCGAgGugUGGCGuuua---GG--UGCG- -5'
18048 5' -54.1 NC_004680.1 + 34207 0.66 0.782464
Target:  5'- cUGC-GCaUCCACACuCGCAugacccagGAUCUccauACGCg -3'
miRNA:   3'- -ACGuCG-AGGUGUG-GCGU--------UUAGG----UGCG- -5'
18048 5' -54.1 NC_004680.1 + 47914 0.66 0.772352
Target:  5'- cGCAGCcagCCgGCGCUcCAAcUCCGCGUc -3'
miRNA:   3'- aCGUCGa--GG-UGUGGcGUUuAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 10680 0.66 0.766213
Target:  5'- aGCGGCaUCCcggaacgccucuuugAUGCCGuCGccgugggcaacGAUCCACGCg -3'
miRNA:   3'- aCGUCG-AGG---------------UGUGGC-GU-----------UUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 4880 0.66 0.751696
Target:  5'- ---cGUUCCACcgguCgGCGGAUUCGCGCa -3'
miRNA:   3'- acguCGAGGUGu---GgCGUUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 6818 0.67 0.730542
Target:  5'- cGCAGCUCCGCcACC--AAAcCCgGCGCc -3'
miRNA:   3'- aCGUCGAGGUG-UGGcgUUUaGG-UGCG- -5'
18048 5' -54.1 NC_004680.1 + 58656 0.66 0.751696
Target:  5'- gUGuCGGC-CCACgugucgcguccGCCGUGuuUCCAUGCg -3'
miRNA:   3'- -AC-GUCGaGGUG-----------UGGCGUuuAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 22403 0.66 0.762092
Target:  5'- cGCGguaauaccGCUCCGCGCCGgAcauUCCAaccUGCg -3'
miRNA:   3'- aCGU--------CGAGGUGUGGCgUuu-AGGU---GCG- -5'
18048 5' -54.1 NC_004680.1 + 13409 0.66 0.792417
Target:  5'- cGCGGCgagUCCAUuucggggaccgGCCGCGGcauUCCACa- -3'
miRNA:   3'- aCGUCG---AGGUG-----------UGGCGUUu--AGGUGcg -5'
18048 5' -54.1 NC_004680.1 + 25904 0.67 0.741175
Target:  5'- gGUGGCggCCGcCGCCGCAGugCCgaACGCa -3'
miRNA:   3'- aCGUCGa-GGU-GUGGCGUUuaGG--UGCG- -5'
18048 5' -54.1 NC_004680.1 + 43586 0.66 0.782464
Target:  5'- cGguGUcCCACcuGCCGCGAAacuugucCCACGUg -3'
miRNA:   3'- aCguCGaGGUG--UGGCGUUUa------GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 44408 0.66 0.762092
Target:  5'- cGUugAGCcCCACAUacuuugagGCGGAUCCGCGUu -3'
miRNA:   3'- aCG--UCGaGGUGUGg-------CGUUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 27897 0.67 0.730542
Target:  5'- cUGCGGCcaaCCAucCAgCGCGuagCCGCGCu -3'
miRNA:   3'- -ACGUCGa--GGU--GUgGCGUuuaGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 55856 0.67 0.724114
Target:  5'- gGCGGCUUUggcgaGCGCCGCuuggacuagaagcAUCCACGg -3'
miRNA:   3'- aCGUCGAGG-----UGUGGCGuu-----------UAGGUGCg -5'
18048 5' -54.1 NC_004680.1 + 46352 0.66 0.782464
Target:  5'- cGCAGuCUgCGCAuCCGUu--UCCGcCGCa -3'
miRNA:   3'- aCGUC-GAgGUGU-GGCGuuuAGGU-GCG- -5'
18048 5' -54.1 NC_004680.1 + 9926 0.66 0.772352
Target:  5'- cGCGGCcagccaCCGCGCCaGCcu-UCgACGCa -3'
miRNA:   3'- aCGUCGa-----GGUGUGG-CGuuuAGgUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.