miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 5' -54.1 NC_004680.1 + 59183 0.67 0.719809
Target:  5'- cUGCaaGGCgugCCACGCgCcCAAGUCC-CGCg -3'
miRNA:   3'- -ACG--UCGa--GGUGUG-GcGUUUAGGuGCG- -5'
18048 5' -54.1 NC_004680.1 + 59081 0.73 0.392415
Target:  5'- aUGCGGCcgCCaagcacaacccaACACCgGCGAAcUCCACGCc -3'
miRNA:   3'- -ACGUCGa-GG------------UGUGG-CGUUU-AGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 58889 0.71 0.500876
Target:  5'- cGCAuucGCgaaaaaCUGCGCCGCAAugCCACGCg -3'
miRNA:   3'- aCGU---CGa-----GGUGUGGCGUUuaGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 58656 0.66 0.751696
Target:  5'- gUGuCGGC-CCACgugucgcguccGCCGUGuuUCCAUGCg -3'
miRNA:   3'- -AC-GUCGaGGUG-----------UGGCGUuuAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 58206 0.73 0.38333
Target:  5'- -cCAGCUCCACGCCGCA---CUAacaGCg -3'
miRNA:   3'- acGUCGAGGUGUGGCGUuuaGGUg--CG- -5'
18048 5' -54.1 NC_004680.1 + 57427 0.71 0.490437
Target:  5'- aGCAGUUCaaccgcaGCGCCGCcuacaaCCGCGCc -3'
miRNA:   3'- aCGUCGAGg------UGUGGCGuuua--GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 55856 0.67 0.724114
Target:  5'- gGCGGCUUUggcgaGCGCCGCuuggacuagaagcAUCCACGg -3'
miRNA:   3'- aCGUCGAGG-----UGUGGCGuu-----------UAGGUGCg -5'
18048 5' -54.1 NC_004680.1 + 55101 0.8 0.142045
Target:  5'- gGCGGCgagCCauGCGCCGCAuGAUCCugGCc -3'
miRNA:   3'- aCGUCGa--GG--UGUGGCGU-UUAGGugCG- -5'
18048 5' -54.1 NC_004680.1 + 53189 0.81 0.116599
Target:  5'- cUGcCAGCUCCACGCCG-AAAUUUACGCc -3'
miRNA:   3'- -AC-GUCGAGGUGUGGCgUUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 53183 0.75 0.285593
Target:  5'- gGCuGUcCCACGCgGC-GAUCCACGCa -3'
miRNA:   3'- aCGuCGaGGUGUGgCGuUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 52350 0.71 0.490437
Target:  5'- aGuCAGgUCCACACC-CGuGUCCACGa -3'
miRNA:   3'- aC-GUCgAGGUGUGGcGUuUAGGUGCg -5'
18048 5' -54.1 NC_004680.1 + 52259 0.69 0.576298
Target:  5'- cGCAGCUCUGCGgcgagggcuUCGCGAAgUUGCGCg -3'
miRNA:   3'- aCGUCGAGGUGU---------GGCGUUUaGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 52175 0.68 0.631713
Target:  5'- cGCgaAGC-CCuCGCCGCAGAgCUGCGCc -3'
miRNA:   3'- aCG--UCGaGGuGUGGCGUUUaGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 51654 0.72 0.420494
Target:  5'- gGCGGCUCCGgGa---AGGUCCGCGCa -3'
miRNA:   3'- aCGUCGAGGUgUggcgUUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 51545 0.68 0.676103
Target:  5'- gGcCAGUUCCA-GCCGCA--UCCACaGCc -3'
miRNA:   3'- aC-GUCGAGGUgUGGCGUuuAGGUG-CG- -5'
18048 5' -54.1 NC_004680.1 + 49519 0.67 0.698087
Target:  5'- cGCGcGCUCCACaacaucacucACUGCAagccuccagucGAUCCGcCGCc -3'
miRNA:   3'- aCGU-CGAGGUG----------UGGCGU-----------UUAGGU-GCG- -5'
18048 5' -54.1 NC_004680.1 + 48507 0.7 0.510354
Target:  5'- cUGCAcgacaccGCUCCAgGacaCGCGGAucaUCCGCGCu -3'
miRNA:   3'- -ACGU-------CGAGGUgUg--GCGUUU---AGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 47914 0.66 0.772352
Target:  5'- cGCAGCcagCCgGCGCUcCAAcUCCGCGUc -3'
miRNA:   3'- aCGUCGa--GG-UGUGGcGUUuAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 46352 0.66 0.782464
Target:  5'- cGCAGuCUgCGCAuCCGUu--UCCGcCGCa -3'
miRNA:   3'- aCGUC-GAgGUGU-GGCGuuuAGGU-GCG- -5'
18048 5' -54.1 NC_004680.1 + 45181 0.69 0.598385
Target:  5'- gGCGGCUCU-CGCCGCGAcgacaCCaACGUg -3'
miRNA:   3'- aCGUCGAGGuGUGGCGUUua---GG-UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.