miRNA display CGI


Results 41 - 60 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 5' -54.1 NC_004680.1 + 24927 0.68 0.663934
Target:  5'- cGCAGCguuguagUCCccgGCGCCucccGCAGAUCCAUugGCg -3'
miRNA:   3'- aCGUCG-------AGG---UGUGG----CGUUUAGGUG--CG- -5'
18048 5' -54.1 NC_004680.1 + 37029 0.68 0.653949
Target:  5'- aUGCcgGGUcaCCGCAUCGC-AGUUCGCGCg -3'
miRNA:   3'- -ACG--UCGa-GGUGUGGCGuUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 25333 0.68 0.653949
Target:  5'- aGCAGCgcguguaccaacUCCGCGCCGCugguGAcCCGaacCGCu -3'
miRNA:   3'- aCGUCG------------AGGUGUGGCGu---UUaGGU---GCG- -5'
18048 5' -54.1 NC_004680.1 + 1216 0.68 0.642836
Target:  5'- gUGCGGCUCaucgaaAUGCUGaaacgucGUCCGCGCa -3'
miRNA:   3'- -ACGUCGAGg-----UGUGGCguu----UAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 24783 0.68 0.642836
Target:  5'- gGCAGCggCgGCACCGCuuucguGUCCGgGa -3'
miRNA:   3'- aCGUCGa-GgUGUGGCGuu----UAGGUgCg -5'
18048 5' -54.1 NC_004680.1 + 26692 0.68 0.631713
Target:  5'- cGCAcccGCgaacaggUCGC-CCGCgAAGUCCACGCu -3'
miRNA:   3'- aCGU---CGa------GGUGuGGCG-UUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 15211 0.68 0.631713
Target:  5'- gUGUAGaaCgCAUACCGCAAAcCCGCGg -3'
miRNA:   3'- -ACGUCgaG-GUGUGGCGUUUaGGUGCg -5'
18048 5' -54.1 NC_004680.1 + 52175 0.68 0.631713
Target:  5'- cGCgaAGC-CCuCGCCGCAGAgCUGCGCc -3'
miRNA:   3'- aCG--UCGaGGuGUGGCGUUUaGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 12375 0.69 0.62059
Target:  5'- cGCGGgUCCACugC-CGGGUCCG-GCu -3'
miRNA:   3'- aCGUCgAGGUGugGcGUUUAGGUgCG- -5'
18048 5' -54.1 NC_004680.1 + 42378 0.69 0.62059
Target:  5'- gGcCAGCaUCCGCGCCGCuuccUCCAgGa -3'
miRNA:   3'- aC-GUCG-AGGUGUGGCGuuu-AGGUgCg -5'
18048 5' -54.1 NC_004680.1 + 23895 0.69 0.598385
Target:  5'- cGCAGCUUgACgguaaggcgGCCGCGucgCaCACGCa -3'
miRNA:   3'- aCGUCGAGgUG---------UGGCGUuuaG-GUGCG- -5'
18048 5' -54.1 NC_004680.1 + 45181 0.69 0.598385
Target:  5'- gGCGGCUCU-CGCCGCGAcgacaCCaACGUg -3'
miRNA:   3'- aCGUCGAGGuGUGGCGUUua---GG-UGCG- -5'
18048 5' -54.1 NC_004680.1 + 40690 0.69 0.576298
Target:  5'- cGCAGagccCCACGCCacgacgugcGCAGAgccCCACGCc -3'
miRNA:   3'- aCGUCga--GGUGUGG---------CGUUUa--GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 25566 0.69 0.576298
Target:  5'- cGCGGUgucugaugUCuUACACCGCAGGUCUAacUGCg -3'
miRNA:   3'- aCGUCG--------AG-GUGUGGCGUUUAGGU--GCG- -5'
18048 5' -54.1 NC_004680.1 + 40642 0.69 0.576298
Target:  5'- cGCAGagccCCACGCCacgacgugcGCAGAgccCCACGCc -3'
miRNA:   3'- aCGUCga--GGUGUGG---------CGUUUa--GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 40738 0.69 0.576298
Target:  5'- cGCAGagccCCACGCCacgacgugcGCAGAgucCCACGCc -3'
miRNA:   3'- aCGUCga--GGUGUGG---------CGUUUa--GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 52259 0.69 0.576298
Target:  5'- cGCAGCUCUGCGgcgagggcuUCGCGAAgUUGCGCg -3'
miRNA:   3'- aCGUCGAGGUGU---------GGCGUUUaGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 29206 0.69 0.576298
Target:  5'- aGCcGUUCCGggguUGCCGCGGcguUCCGCGCc -3'
miRNA:   3'- aCGuCGAGGU----GUGGCGUUu--AGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 32660 0.7 0.56532
Target:  5'- cGCGGaUCCAC-CCGCcaacacCCACGCu -3'
miRNA:   3'- aCGUCgAGGUGuGGCGuuua--GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 18949 0.7 0.554398
Target:  5'- cGguGauccccgCCACGCCGUAgccGAUCCACGa -3'
miRNA:   3'- aCguCga-----GGUGUGGCGU---UUAGGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.