miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 5' -54.1 NC_004680.1 + 25904 0.67 0.741175
Target:  5'- gGUGGCggCCGcCGCCGCAGugCCgaACGCa -3'
miRNA:   3'- aCGUCGa-GGU-GUGGCGUUuaGG--UGCG- -5'
18048 5' -54.1 NC_004680.1 + 40668 0.67 0.741175
Target:  5'- gUGgGGCUCUGCGCacgucgaggCGCGGGgcUCUGCGCa -3'
miRNA:   3'- -ACgUCGAGGUGUG---------GCGUUU--AGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 14602 0.67 0.741175
Target:  5'- cGCGGCgaUCC---CCGCGAAgucgCCugGCg -3'
miRNA:   3'- aCGUCG--AGGuguGGCGUUUa---GGugCG- -5'
18048 5' -54.1 NC_004680.1 + 6818 0.67 0.730542
Target:  5'- cGCAGCUCCGCcACC--AAAcCCgGCGCc -3'
miRNA:   3'- aCGUCGAGGUG-UGGcgUUUaGG-UGCG- -5'
18048 5' -54.1 NC_004680.1 + 27897 0.67 0.730542
Target:  5'- cUGCGGCcaaCCAucCAgCGCGuagCCGCGCu -3'
miRNA:   3'- -ACGUCGa--GGU--GUgGCGUuuaGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 9008 0.67 0.730542
Target:  5'- aGCAGCacgaccguugaUCUGCuucgACCGCAAcaccucguaguuGUCCAUGCc -3'
miRNA:   3'- aCGUCG-----------AGGUG----UGGCGUU------------UAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 55856 0.67 0.724114
Target:  5'- gGCGGCUUUggcgaGCGCCGCuuggacuagaagcAUCCACGg -3'
miRNA:   3'- aCGUCGAGG-----UGUGGCGuu-----------UAGGUGCg -5'
18048 5' -54.1 NC_004680.1 + 59183 0.67 0.719809
Target:  5'- cUGCaaGGCgugCCACGCgCcCAAGUCC-CGCg -3'
miRNA:   3'- -ACG--UCGa--GGUGUG-GcGUUUAGGuGCG- -5'
18048 5' -54.1 NC_004680.1 + 25576 0.67 0.719809
Target:  5'- aUGUuacGCaCCAcCACCGCAAcuGUCCuCGCa -3'
miRNA:   3'- -ACGu--CGaGGU-GUGGCGUU--UAGGuGCG- -5'
18048 5' -54.1 NC_004680.1 + 28982 0.67 0.719809
Target:  5'- cGCGGC-CCGCacguucgcccaaACCGCGAucgCCACa- -3'
miRNA:   3'- aCGUCGaGGUG------------UGGCGUUua-GGUGcg -5'
18048 5' -54.1 NC_004680.1 + 9068 0.67 0.708986
Target:  5'- aGCucGUUCCGCgAUCGUGAagcccugcucgGUCCACGCc -3'
miRNA:   3'- aCGu-CGAGGUG-UGGCGUU-----------UAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 12677 0.67 0.708986
Target:  5'- cGcCGGC-CUGCACCGCcauUCCgaGCGCa -3'
miRNA:   3'- aC-GUCGaGGUGUGGCGuuuAGG--UGCG- -5'
18048 5' -54.1 NC_004680.1 + 14423 0.67 0.708986
Target:  5'- aGCAGCggaccaaacUCCACAUa-CucAUCCGCGCc -3'
miRNA:   3'- aCGUCG---------AGGUGUGgcGuuUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 8223 0.67 0.698087
Target:  5'- aGCAGCagCAacugguacuCCGcCGAAUCCGCGUc -3'
miRNA:   3'- aCGUCGagGUgu-------GGC-GUUUAGGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 27953 0.67 0.698087
Target:  5'- aUGCcgAGCUUCGCGCCGaucgcgCCcaGCGCg -3'
miRNA:   3'- -ACG--UCGAGGUGUGGCguuua-GG--UGCG- -5'
18048 5' -54.1 NC_004680.1 + 49519 0.67 0.698087
Target:  5'- cGCGcGCUCCACaacaucacucACUGCAagccuccagucGAUCCGcCGCc -3'
miRNA:   3'- aCGU-CGAGGUG----------UGGCGU-----------UUAGGU-GCG- -5'
18048 5' -54.1 NC_004680.1 + 38355 0.68 0.687122
Target:  5'- cUGCGGCUUC-UACUGCuGGAUCgcuCACGCu -3'
miRNA:   3'- -ACGUCGAGGuGUGGCG-UUUAG---GUGCG- -5'
18048 5' -54.1 NC_004680.1 + 5737 0.68 0.687122
Target:  5'- cGCAGaUCgACACCGUuGAggcgCUGCGCg -3'
miRNA:   3'- aCGUCgAGgUGUGGCGuUUa---GGUGCG- -5'
18048 5' -54.1 NC_004680.1 + 51545 0.68 0.676103
Target:  5'- gGcCAGUUCCA-GCCGCA--UCCACaGCc -3'
miRNA:   3'- aC-GUCGAGGUgUGGCGUuuAGGUG-CG- -5'
18048 5' -54.1 NC_004680.1 + 44353 0.68 0.674999
Target:  5'- gGCAGUUCgACACCGUAcAaccagacagcuucUCCcCGCu -3'
miRNA:   3'- aCGUCGAGgUGUGGCGUuU-------------AGGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.