miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18052 3' -63.2 NC_004680.1 + 8315 0.68 0.275705
Target:  5'- gCGGCCCGaCCCG-GCGGgaaCGAUCGcCc -3'
miRNA:   3'- gGCCGGGC-GGGUgCGCC---GCUAGCaGc -5'
18052 3' -63.2 NC_004680.1 + 27178 0.69 0.26929
Target:  5'- aCCGGCCCGCCUauaACGaguuucCGAUCugGUCGg -3'
miRNA:   3'- -GGCCGGGCGGG---UGCgcc---GCUAG--CAGC- -5'
18052 3' -63.2 NC_004680.1 + 36016 0.69 0.239014
Target:  5'- aCCGGCCgaGgCCACGCGcGCGuuUCGcCGc -3'
miRNA:   3'- -GGCCGGg-CgGGUGCGC-CGCu-AGCaGC- -5'
18052 3' -63.2 NC_004680.1 + 16141 0.69 0.239014
Target:  5'- uUGGCCCGUaCCAUcCGGCGAUUGagCGg -3'
miRNA:   3'- gGCCGGGCG-GGUGcGCCGCUAGCa-GC- -5'
18052 3' -63.2 NC_004680.1 + 7528 0.69 0.239014
Target:  5'- gCGGCCCacauGCCgCACcaaGUGGCcGUCGUCGu -3'
miRNA:   3'- gGCCGGG----CGG-GUG---CGCCGcUAGCAGC- -5'
18052 3' -63.2 NC_004680.1 + 53184 0.7 0.222249
Target:  5'- -aGGCUguCCCACGCGGCGAUCcaCGc -3'
miRNA:   3'- ggCCGGgcGGGUGCGCCGCUAGcaGC- -5'
18052 3' -63.2 NC_004680.1 + 11097 0.71 0.196537
Target:  5'- gCGGCCCcggcGCCCAagcagaacgcCGCGGCcguUCGUCa -3'
miRNA:   3'- gGCCGGG----CGGGU----------GCGCCGcu-AGCAGc -5'
18052 3' -63.2 NC_004680.1 + 14695 0.71 0.196537
Target:  5'- gCCGGUUCGCCaggcgacuuCGCGGgGAUCGcCGc -3'
miRNA:   3'- -GGCCGGGCGGgu-------GCGCCgCUAGCaGC- -5'
18052 3' -63.2 NC_004680.1 + 27599 0.71 0.173461
Target:  5'- uCCuGCaCCGCCagaUAUGCGGCGA-CGUCGa -3'
miRNA:   3'- -GGcCG-GGCGG---GUGCGCCGCUaGCAGC- -5'
18052 3' -63.2 NC_004680.1 + 12269 0.71 0.173461
Target:  5'- aCUGGCCCGCCCAa--GGCGcuggUGUUGg -3'
miRNA:   3'- -GGCCGGGCGGGUgcgCCGCua--GCAGC- -5'
18052 3' -63.2 NC_004680.1 + 58510 0.74 0.124425
Target:  5'- gUGGCgUGCCCAUGUGGUGAuugcuUCGUCu -3'
miRNA:   3'- gGCCGgGCGGGUGCGCCGCU-----AGCAGc -5'
18052 3' -63.2 NC_004680.1 + 43622 0.75 0.100716
Target:  5'- cCCGG-CCGCCCuggucgaACGUGGCGG-CGUCGc -3'
miRNA:   3'- -GGCCgGGCGGG-------UGCGCCGCUaGCAGC- -5'
18052 3' -63.2 NC_004680.1 + 32384 0.75 0.098361
Target:  5'- aCUGGUCCGCgCCAuuucgUGCGGCcGUCGUCGc -3'
miRNA:   3'- -GGCCGGGCG-GGU-----GCGCCGcUAGCAGC- -5'
18052 3' -63.2 NC_004680.1 + 29094 0.77 0.071557
Target:  5'- aCCGcGCCCGCgCCGagUGUGGCGAUCG-CGg -3'
miRNA:   3'- -GGC-CGGGCG-GGU--GCGCCGCUAGCaGC- -5'
18052 3' -63.2 NC_004680.1 + 1915 1.1 0.00022
Target:  5'- aCCGGCCCGCCCACGCGGCGAUCGUCGa -3'
miRNA:   3'- -GGCCGGGCGGGUGCGCCGCUAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.