miRNA: 3'- ggGGUGCCUAGCGUCaUGUaCGCGgu -5'
miRNA: 3'- -GGGGUGCCUAGCGucAUGuaCGCGGU- -5'
miRNA: 3'- gGGGUgCCUAGCGUCaUGUaCGCGGu -5'
miRNA: 3'- -GGGGUGCCUAGCGUCAUGUACGCGGU- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18052 | 5' | -56.3 | NC_004680.1 | + | 47660 | 0.7 | 0.438111 |
|
Target: 5'- -aCCACGGAUCGUAG-GCG-GCGCa- -3' miRNA: 3'- ggGGUGCCUAGCGUCaUGUaCGCGgu -5' |
|||||||
| 18052 | 5' | -56.3 | NC_004680.1 | + | 39585 | 0.72 | 0.357343 |
|
Target: 5'- aUCUCACGGAUCGC--UACc-GCGCCAg -3' miRNA: 3'- -GGGGUGCCUAGCGucAUGuaCGCGGU- -5' |
|||||||
| 18052 | 5' | -56.3 | NC_004680.1 | + | 11889 | 0.72 | 0.349037 |
|
Target: 5'- gCCCGgGGGUUGCAG-ACG-GCGCCc -3' miRNA: 3'- gGGGUgCCUAGCGUCaUGUaCGCGGu -5' |
|||||||
| 18052 | 5' | -56.3 | NC_004680.1 | + | 1881 | 1.1 | 0.000806 |
|
Target: 5'- gCCCCACGGAUCGCAGUACAUGCGCCAc -3' miRNA: 3'- -GGGGUGCCUAGCGUCAUGUACGCGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home