Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18054 | 3' | -53.4 | NC_004680.1 | + | 2203 | 1.09 | 0.001674 |
Target: 5'- cAACACACGCCUCCCACGACAACAUCCc -3' miRNA: 3'- -UUGUGUGCGGAGGGUGCUGUUGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 51532 | 0.74 | 0.381586 |
Target: 5'- aGGCGCACGCCgCCCAUGucGCuGAUGUCCu -3' miRNA: 3'- -UUGUGUGCGGaGGGUGC--UG-UUGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 44923 | 0.73 | 0.42828 |
Target: 5'- gGACACGCGCC-CCgucCGACAGCcaGUCCc -3' miRNA: 3'- -UUGUGUGCGGaGGgu-GCUGUUG--UAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 40649 | 0.72 | 0.498936 |
Target: 5'- cGACGCGCGCagagcCCCACGccACGACGUgCg -3' miRNA: 3'- -UUGUGUGCGga---GGGUGC--UGUUGUAgG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 47437 | 0.72 | 0.498936 |
Target: 5'- cACGCaACGCUUCCCG-GAUAaggGCGUCCg -3' miRNA: 3'- uUGUG-UGCGGAGGGUgCUGU---UGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 11336 | 0.71 | 0.509462 |
Target: 5'- --gGCAUGCCaggaaUCCCcgGCGGCAACGUCg -3' miRNA: 3'- uugUGUGCGG-----AGGG--UGCUGUUGUAGg -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 37762 | 0.71 | 0.52008 |
Target: 5'- cAACACGCGCCUCCCGaccguuacCGAUcgGAUAagCCu -3' miRNA: 3'- -UUGUGUGCGGAGGGU--------GCUG--UUGUa-GG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 51264 | 0.71 | 0.530784 |
Target: 5'- -cCGCACGUaCUCCCucagauGCGACAGCG-CCa -3' miRNA: 3'- uuGUGUGCG-GAGGG------UGCUGUUGUaGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 37981 | 0.71 | 0.552422 |
Target: 5'- aGGCGCACGCCgguacgcaUCCUcgGCGGCAGuCAUgCCg -3' miRNA: 3'- -UUGUGUGCGG--------AGGG--UGCUGUU-GUA-GG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 30031 | 0.7 | 0.563341 |
Target: 5'- gGACGCaaACGgUUCCUGCGGCG-CGUCCa -3' miRNA: 3'- -UUGUG--UGCgGAGGGUGCUGUuGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 430 | 0.7 | 0.607503 |
Target: 5'- cGCACGCGCCU-UCGCGuuauCGGCAgUCCa -3' miRNA: 3'- uUGUGUGCGGAgGGUGCu---GUUGU-AGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 10801 | 0.69 | 0.626411 |
Target: 5'- cAACGCccuugauCGCCUUCCACGcggcgaacgcgcccACAACAUCg -3' miRNA: 3'- -UUGUGu------GCGGAGGGUGC--------------UGUUGUAGg -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 12201 | 0.69 | 0.674187 |
Target: 5'- --aGC-CGCCccgUCCGCGGCAGCGUUCc -3' miRNA: 3'- uugUGuGCGGa--GGGUGCUGUUGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 55842 | 0.68 | 0.680813 |
Target: 5'- gGACACucaccuuugacgagACGCC-CgCCGCGACAACcaucgucGUCCa -3' miRNA: 3'- -UUGUG--------------UGCGGaG-GGUGCUGUUG-------UAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 39046 | 0.68 | 0.696204 |
Target: 5'- cACGCugcUGCCUCaUCGCGGCGAguUCCu -3' miRNA: 3'- uUGUGu--GCGGAG-GGUGCUGUUguAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 50629 | 0.68 | 0.707124 |
Target: 5'- ----aGCGCaUCCCAguccgccugguCGACAGCAUCCu -3' miRNA: 3'- uugugUGCGgAGGGU-----------GCUGUUGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 33657 | 0.68 | 0.717968 |
Target: 5'- cAGCGCAgGCCgaggaguucCCCACGGCgGGCGcCCg -3' miRNA: 3'- -UUGUGUgCGGa--------GGGUGCUG-UUGUaGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 28867 | 0.67 | 0.739384 |
Target: 5'- aAACGCACcgGCC-CgCACGuggacuACAACGUCCa -3' miRNA: 3'- -UUGUGUG--CGGaGgGUGC------UGUUGUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 45595 | 0.67 | 0.749932 |
Target: 5'- uGGCGuCGCGCCUCCUGCuguacaucuccGACGucaggauCGUCCg -3' miRNA: 3'- -UUGU-GUGCGGAGGGUG-----------CUGUu------GUAGG- -5' |
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18054 | 3' | -53.4 | NC_004680.1 | + | 41171 | 0.67 | 0.764491 |
Target: 5'- -cCACGCGCCgcgCCUuugccuugucguccaGCGGCAcaagcuCAUCCa -3' miRNA: 3'- uuGUGUGCGGa--GGG---------------UGCUGUu-----GUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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